Analysis of interatomic Contacts of Structural Units in PDB entry:
5GW0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GW0 entry

There are 6 chains in PDB entry 5GW0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 106GLU 278
B
 PRO 107LEU 277
C
 ARG 106GLU 278
D
 ARG 106LEU 277
E
 SER 108GLU 278
F
 THR 109GLU 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5GW0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
145 159Right-handed alpha
Helix 2
AA2
A
177 198Right-handed alpha
Helix 3
AA3
A
198 203Right-handed alpha
Helix 4
AA4
A
204 212Right-handed alpha
Helix 5
AA5
A
221 230Right-handed alpha
Helix 6
AA6
A
232 277Right-handed alpha
Helix 7
AA7
B
145 159Right-handed alpha
Helix 8
AA8
B
178 198Right-handed alpha
Helix 9
AA9
B
198 203Right-handed alpha
Helix 10
AB1
B
204 212Right-handed alpha
Helix 11
AB2
B
221 230Right-handed alpha
Helix 12
AB3
B
232 277Right-handed alpha
Helix 13
AB4
C
145 159Right-handed alpha
Helix 14
AB5
C
177 198Right-handed alpha
Helix 15
AB6
C
198 204Right-handed alpha
Helix 16
AB7
C
204 211Right-handed alpha
Helix 17
AB8
C
221 230Right-handed alpha
Helix 18
AB9
C
232 277Right-handed alpha
Helix 19
AC1
D
145 159Right-handed alpha
Helix 20
AC2
D
177 198Right-handed alpha
Helix 21
AC3
D
198 203Right-handed alpha
Helix 22
AC4
D
204 212Right-handed alpha
Helix 23
AC5
D
221 230Right-handed alpha
Helix 24
AC6
D
232 277Right-handed alpha
Helix 25
AC7
E
145 159Right-handed alpha
Helix 26
AC8
E
177 198Right-handed alpha
Helix 27
AC9
E
198 203Right-handed alpha
Helix 28
AD1
E
204 212Right-handed alpha
Helix 29
AD2
E
221 230Right-handed alpha
Helix 30
AD3
E
232 277Right-handed alpha
Helix 31
AD4
F
145 159Right-handed alpha
Helix 32
AD5
F
177 198Right-handed alpha
Helix 33
AD6
F
198 204Right-handed alpha
Helix 34
AD7
F
204 211Right-handed alpha
Helix 35
AD8
F
222 230Right-handed alpha
Helix 36
AD9
F
232 277Right-handed alpha
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There are 6 sheets in PDB entry 5GW0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 119first strand
Strand 2
A
123 132anti-parallel
Strand 3
A
138 144anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 118first strand
Strand 2
B
124 132anti-parallel
Strand 3
B
138 144anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 119first strand
Strand 2
C
123 132anti-parallel
Strand 3
C
138 144anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
111 119first strand
Strand 2
D
123 132anti-parallel
Strand 3
D
138 144anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
111 119first strand
Strand 2
E
123 131anti-parallel
Strand 3
E
139 144anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
111 119first strand
Strand 2
F
123 130anti-parallel
Strand 3
F
140 144anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il