Analysis of interatomic Contacts of Structural Units in PDB entry:
5GW1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GW1 entry

There are 7 chains in PDB entry 5GW1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 104	GLU 278
B	ASP 105	LEU 277
C	TRP 103	GLU 278
D	ARG 106	LEU 277
E	TRP 103	GLU 278
F	ASP 105	GLU 278
G	THR 109	LEU 263

There are 43 helices in PDB entry 5GW1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	145	159	Right-handed alpha
Helix 2	AA2	A	180	198	Right-handed alpha
Helix 3	AA3	A	198	203	Right-handed alpha
Helix 4	AA4	A	204	211	Right-handed alpha
Helix 5	AA5	A	222	228	Right-handed alpha
Helix 6	AA6	A	232	278	Right-handed alpha
Helix 7	AA7	B	145	159	Right-handed alpha
Helix 8	AA8	B	177	198	Right-handed alpha
Helix 9	AA9	B	204	212	Right-handed alpha
Helix 10	AB1	B	220	230	Right-handed alpha
Helix 11	AB2	B	232	275	Right-handed alpha
Helix 12	AB3	C	145	159	Right-handed alpha
Helix 13	AB4	C	177	198	Right-handed alpha
Helix 14	AB5	C	204	211	Right-handed alpha
Helix 15	AB6	C	221	230	Right-handed alpha
Helix 16	AB7	C	232	274	Right-handed alpha
Helix 17	AB8	D	145	159	Right-handed alpha
Helix 18	AB9	D	177	198	Right-handed alpha
Helix 19	AC1	D	198	203	Right-handed alpha
Helix 20	AC2	D	204	211	Right-handed alpha
Helix 21	AC3	D	221	228	Right-handed alpha
Helix 22	AC4	D	233	276	Right-handed alpha
Helix 23	AC5	E	145	159	Right-handed alpha
Helix 24	AC6	E	177	198	Right-handed alpha
Helix 25	AC7	E	204	212	Right-handed alpha
Helix 26	AC8	E	221	230	Right-handed alpha
Helix 27	AC9	E	232	278	Right-handed alpha
Helix 28	AD1	F	145	159	Right-handed alpha
Helix 29	AD2	F	179	197	Right-handed alpha
Helix 30	AD3	F	198	202	Right-handed 310
Helix 31	AD4	F	205	211	Right-handed alpha
Helix 32	AD5	F	232	275	Right-handed alpha
Helix 33	AD6	G	144	159	Right-handed alpha
Helix 34	AD7	G	178	196	Right-handed alpha
Helix 35	AD8	G	206	211	Right-handed alpha
Helix 36	AD9	G	221	230	Right-handed alpha
Helix 37	AE1	G	232	274	Right-handed alpha
Helix 38	AE2	H	145	159	Right-handed alpha
Helix 39	AE3	H	177	198	Right-handed alpha
Helix 40	AE4	H	204	212	Right-handed alpha
Helix 41	AE5	H	221	230	Right-handed alpha
Helix 42	AE6	H	232	273	Right-handed alpha
Helix 43	AE7	H	274	277	Right-handed 310

There are 8 sheets in PDB entry 5GW1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	119	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	138	144	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	119	first strand
Strand 2	B	123	131	anti-parallel
Strand 3	B	139	144	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	118	first strand
Strand 2	C	124	131	anti-parallel
Strand 3	C	139	144	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	119	first strand
Strand 2	D	123	132	anti-parallel
Strand 3	D	138	144	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	111	119	first strand
Strand 2	E	123	134	anti-parallel
Strand 3	E	137	144	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	111	119	first strand
Strand 2	F	123	131	anti-parallel
Strand 3	F	139	144	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	115	119	first strand
Strand 2	G	123	130	anti-parallel
Strand 3	G	140	143	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	111	119	first strand
Strand 2	H	123	132	anti-parallel
Strand 3	H	138	144	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GW1

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GW1