Analysis of interatomic Contacts of Structural Units in PDB entry:
5GW8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GW8 entry

There are 2 chains in PDB entry 5GW8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 21TYR 304
B
 GLY 19TYR 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5GW8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 53Right-handed alpha
Helix 2
AA2
A
102 110Right-handed alpha
Helix 3
AA3
A
111 115Right-handed 310
Helix 4
AA4
A
124 128Right-handed 310
Helix 5
AA5
A
136 144Right-handed alpha
Helix 6
AA6
A
145 160Right-handed alpha
Helix 7
AA7
A
171 188Right-handed alpha
Helix 8
AA8
A
205 217Right-handed alpha
Helix 9
AA9
A
229 233Right-handed 310
Helix 10
AB1
A
235 239Right-handed 310
Helix 11
AB2
A
268 273Right-handed 310
Helix 12
AB3
B
39 53Right-handed alpha
Helix 13
AB4
B
102 110Right-handed alpha
Helix 14
AB5
B
111 115Right-handed 310
Helix 15
AB6
B
124 128Right-handed 310
Helix 16
AB7
B
136 144Right-handed alpha
Helix 17
AB8
B
145 161Right-handed alpha
Helix 18
AB9
B
171 188Right-handed alpha
Helix 19
AC1
B
205 217Right-handed alpha
Helix 20
AC2
B
229 233Right-handed 310
Helix 21
AC3
B
235 239Right-handed 310
Helix 22
AC4
B
268 273Right-handed 310
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There are 6 sheets in PDB entry 5GW8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
69 75anti-parallel
Strand 3
A
84 89anti-parallel
Strand 4
A
93 98anti-parallel
Strand 5
A
165 170parallel
Strand 6
A
194 198parallel
Strand 7
A
220 225parallel
Strand 8
A
246 249parallel
Strand 9
A
257 260anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
134 135anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 285first strand
Strand 2
A
288 290anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 66first strand
Strand 2
B
69 75anti-parallel
Strand 3
B
84 89anti-parallel
Strand 4
B
93 98anti-parallel
Strand 5
B
165 170parallel
Strand 6
B
194 198parallel
Strand 7
B
220 225parallel
Strand 8
B
246 249parallel
Strand 9
B
257 260anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 118first strand
Strand 2
B
134 135anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 285first strand
Strand 2
B
288 290anti-parallel
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