Analysis of interatomic Contacts of Structural Units in PDB entry:
5GWD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GWD entry

There are 12 chains in PDB entry 5GWD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 6ALA 25
A
 VAL 27THR 46
A
 TRP 48VAL 69
A
 GLN 71SER 180
A
 LYS 182ASP 233
A
 GLN 235ASN 244
B
 GLY 6ALA 25
B
 VAL 27THR 46
B
 TRP 48VAL 69
B
 GLN 71SER 180
B
 LYS 182ASP 233
B
 GLN 235ASN 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 5GWD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 18Right-handed 310
Helix 2
AA2
A
37 41Right-handed 310
Helix 3
AA3
A
42 47Right-handed alpha
Helix 4
AA4
A
62 74Right-handed alpha
Helix 5
AA5
A
75 79Right-handed 310
Helix 6
AA6
A
108 115Right-handed 310
Helix 7
AA7
A
132 148Right-handed alpha
Helix 8
AA8
A
164 173Right-handed alpha
Helix 9
AA9
A
180 188Right-handed alpha
Helix 10
AB1
A
188 193Right-handed alpha
Helix 11
AB2
A
213 217Right-handed 310
Helix 12
AB3
A
230 241Right-handed alpha
Helix 13
AB4
B
14 18Right-handed 310
Helix 14
AB5
B
37 41Right-handed 310
Helix 15
AB6
B
42 47Right-handed alpha
Helix 16
AB7
B
62 74Right-handed alpha
Helix 17
AB8
B
75 79Right-handed 310
Helix 18
AB9
B
108 115Right-handed 310
Helix 19
AC1
B
132 148Right-handed alpha
Helix 20
AC2
B
164 173Right-handed alpha
Helix 21
AC3
B
180 188Right-handed alpha
Helix 22
AC4
B
190 194Right-handed 310
Helix 23
AC5
B
213 217Right-handed 310
Helix 24
AC6
B
230 241Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5GWD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
53 59parallel
Strand 3
A
94 97parallel
Strand 4
A
122 123parallel
Strand 5
A
105 106anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 86first strand
Strand 2
B
53 59parallel
Strand 3
B
94 97parallel
Strand 4
B
122 123parallel
Strand 5
B
105 106anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il