Analysis of interatomic Contacts of Structural Units in PDB entry:
5GWJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GWJ entry

There are 6 chains in PDB entry 5GWJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 452	ASP 1201
B	SER 449	ASP 1201
C	A 1	C 8
D	T 9	T 20
E	A 1	C 8
F	T 9	T 20

There are 64 helices in PDB entry 5GWJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	467	470	Right-handed 310
Helix 2	AA2	A	478	489	Right-handed alpha
Helix 3	AA3	A	491	495	Right-handed 310
Helix 4	AA4	A	513	519	Right-handed alpha
Helix 5	AA5	A	520	531	Right-handed alpha
Helix 6	AA6	A	542	547	Right-handed 310
Helix 7	AA7	A	559	577	Right-handed alpha
Helix 8	AA8	A	577	582	Right-handed alpha
Helix 9	AA9	A	636	646	Right-handed alpha
Helix 10	AB1	A	646	650	Right-handed alpha
Helix 11	AB2	A	658	670	Right-handed alpha
Helix 12	AB3	A	673	693	Right-handed alpha
Helix 13	AB4	A	711	718	Right-handed alpha
Helix 14	AB5	A	718	731	Right-handed alpha
Helix 15	AB6	A	739	753	Right-handed alpha
Helix 16	AB7	A	760	771	Right-handed alpha
Helix 17	AB8	A	776	789	Right-handed alpha
Helix 18	AB9	A	829	834	Right-handed alpha
Helix 19	AC1	A	835	842	Right-handed 310
Helix 20	AC2	A	862	867	Right-handed alpha
Helix 21	AC3	A	884	897	Right-handed alpha
Helix 22	AC4	A	947	955	Right-handed alpha
Helix 23	AC5	A	955	962	Right-handed alpha
Helix 24	AC6	A	989	1000	Right-handed alpha
Helix 25	AC7	A	1000	1005	Right-handed alpha
Helix 26	AC8	A	1030	1075	Right-handed alpha
Helix 27	AC9	A	1085	1096	Right-handed alpha
Helix 28	AD1	A	1101	1110	Right-handed alpha
Helix 29	AD2	A	1138	1143	Right-handed alpha
Helix 30	AD3	A	1145	1149	Right-handed 310
Helix 31	AD4	A	1150	1173	Right-handed alpha
Helix 32	AD5	A	1175	1201	Right-handed alpha
Helix 33	AD6	B	467	470	Right-handed 310
Helix 34	AD7	B	478	489	Right-handed alpha
Helix 35	AD8	B	491	495	Right-handed 310
Helix 36	AD9	B	513	519	Right-handed alpha
Helix 37	AE1	B	520	531	Right-handed alpha
Helix 38	AE2	B	542	547	Right-handed 310
Helix 39	AE3	B	559	577	Right-handed alpha
Helix 40	AE4	B	577	582	Right-handed alpha
Helix 41	AE5	B	638	646	Right-handed alpha
Helix 42	AE6	B	646	650	Right-handed alpha
Helix 43	AE7	B	658	670	Right-handed alpha
Helix 44	AE8	B	673	694	Right-handed alpha
Helix 45	AE9	B	711	718	Right-handed alpha
Helix 46	AF1	B	718	731	Right-handed alpha
Helix 47	AF2	B	739	753	Right-handed alpha
Helix 48	AF3	B	760	772	Right-handed alpha
Helix 49	AF4	B	776	789	Right-handed alpha
Helix 50	AF5	B	829	834	Right-handed alpha
Helix 51	AF6	B	835	842	Right-handed 310
Helix 52	AF7	B	862	867	Right-handed alpha
Helix 53	AF8	B	884	897	Right-handed alpha
Helix 54	AF9	B	947	955	Right-handed alpha
Helix 55	AG1	B	955	961	Right-handed alpha
Helix 56	AG2	B	989	999	Right-handed alpha
Helix 57	AG3	B	1000	1005	Right-handed alpha
Helix 58	AG4	B	1030	1076	Right-handed alpha
Helix 59	AG5	B	1085	1096	Right-handed alpha
Helix 60	AG6	B	1101	1110	Right-handed alpha
Helix 61	AG7	B	1138	1143	Right-handed alpha
Helix 62	AG8	B	1145	1149	Right-handed 310
Helix 63	AG9	B	1150	1174	Right-handed alpha
Helix 64	AH1	B	1175	1201	Right-handed alpha

There are 14 sheets in PDB entry 5GWJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	502	first strand
Strand 2	A	472	477	parallel
Strand 3	A	551	555	parallel
Strand 4	A	586	589	parallel
Strand 5	A	651	655	anti-parallel
Strand 6	A	708	710	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	758	759	first strand
Strand 2	A	823	824	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	844	847	first strand
Strand 2	A	850	854	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	870	872	first strand
Strand 2	A	877	879	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	914	919	first strand
Strand 2	A	922	926	anti-parallel
Strand 3	A	1008	1012	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	928	933	first strand
Strand 2	A	936	941	anti-parallel
Strand 3	A	984	987	anti-parallel
Strand 4	A	972	975	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1016	1019	first strand
Strand 2	A	1025	1028	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	502	first strand
Strand 2	B	472	477	parallel
Strand 3	B	551	555	parallel
Strand 4	B	586	589	parallel
Strand 5	B	651	655	anti-parallel
Strand 6	B	708	710	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	758	759	first strand
Strand 2	B	823	824	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	844	847	first strand
Strand 2	B	850	854	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	870	872	first strand
Strand 2	B	877	879	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	914	919	first strand
Strand 2	B	922	926	anti-parallel
Strand 3	B	1008	1012	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	928	933	first strand
Strand 2	B	936	941	anti-parallel
Strand 3	B	984	987	anti-parallel
Strand 4	B	972	975	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1016	1019	first strand
Strand 2	B	1025	1028	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GWJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GWJ