Analysis of interatomic Contacts of Structural Units in PDB entry:
5GWK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GWK entry

There are 6 chains in PDB entry 5GWK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 436	GLN 1187
B	LYS 436	GLN 1187
C	A 1	C 8
D	T 9	T 20
E	A 1	C 8
F	T 9	T 20

There are 65 helices in PDB entry 5GWK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	462	474	Right-handed alpha
Helix 2	AA2	A	497	503	Right-handed alpha
Helix 3	AA3	A	504	515	Right-handed alpha
Helix 4	AA4	A	526	530	Right-handed 310
Helix 5	AA5	A	543	561	Right-handed alpha
Helix 6	AA6	A	563	568	Right-handed 310
Helix 7	AA7	A	591	602	Right-handed alpha
Helix 8	AA8	A	604	608	Right-handed 310
Helix 9	AA9	A	615	619	Right-handed 310
Helix 10	AB1	A	620	630	Right-handed alpha
Helix 11	AB2	A	630	634	Right-handed alpha
Helix 12	AB3	A	642	654	Right-handed alpha
Helix 13	AB4	A	657	678	Right-handed alpha
Helix 14	AB5	A	695	702	Right-handed alpha
Helix 15	AB6	A	702	715	Right-handed alpha
Helix 16	AB7	A	723	737	Right-handed alpha
Helix 17	AB8	A	744	755	Right-handed alpha
Helix 18	AB9	A	760	773	Right-handed alpha
Helix 19	AC1	A	813	818	Right-handed alpha
Helix 20	AC2	A	819	826	Right-handed 310
Helix 21	AC3	A	846	851	Right-handed alpha
Helix 22	AC4	A	868	881	Right-handed alpha
Helix 23	AC5	A	931	939	Right-handed alpha
Helix 24	AC6	A	939	945	Right-handed alpha
Helix 25	AC7	A	973	984	Right-handed alpha
Helix 26	AC8	A	984	989	Right-handed alpha
Helix 27	AC9	A	1014	1060	Right-handed alpha
Helix 28	AD1	A	1069	1080	Right-handed alpha
Helix 29	AD2	A	1085	1093	Right-handed alpha
Helix 30	AD3	A	1125	1130	Right-handed alpha
Helix 31	AD4	A	1132	1136	Right-handed 310
Helix 32	AD5	A	1137	1160	Right-handed alpha
Helix 33	AD6	A	1162	1187	Right-handed alpha
Helix 34	AD7	B	462	474	Right-handed alpha
Helix 35	AD8	B	497	503	Right-handed alpha
Helix 36	AD9	B	504	515	Right-handed alpha
Helix 37	AE1	B	526	530	Right-handed 310
Helix 38	AE2	B	543	561	Right-handed alpha
Helix 39	AE3	B	561	566	Right-handed alpha
Helix 40	AE4	B	591	602	Right-handed alpha
Helix 41	AE5	B	604	608	Right-handed 310
Helix 42	AE6	B	620	630	Right-handed alpha
Helix 43	AE7	B	630	634	Right-handed alpha
Helix 44	AE8	B	642	654	Right-handed alpha
Helix 45	AE9	B	657	678	Right-handed alpha
Helix 46	AF1	B	695	702	Right-handed alpha
Helix 47	AF2	B	702	715	Right-handed alpha
Helix 48	AF3	B	723	737	Right-handed alpha
Helix 49	AF4	B	744	755	Right-handed alpha
Helix 50	AF5	B	760	773	Right-handed alpha
Helix 51	AF6	B	813	818	Right-handed alpha
Helix 52	AF7	B	819	826	Right-handed 310
Helix 53	AF8	B	846	850	Right-handed 310
Helix 54	AF9	B	868	881	Right-handed alpha
Helix 55	AG1	B	931	939	Right-handed alpha
Helix 56	AG2	B	939	945	Right-handed alpha
Helix 57	AG3	B	973	984	Right-handed alpha
Helix 58	AG4	B	984	989	Right-handed alpha
Helix 59	AG5	B	1014	1060	Right-handed alpha
Helix 60	AG6	B	1069	1080	Right-handed alpha
Helix 61	AG7	B	1085	1093	Right-handed alpha
Helix 62	AG8	B	1125	1130	Right-handed alpha
Helix 63	AG9	B	1132	1136	Right-handed 310
Helix 64	AH1	B	1137	1160	Right-handed alpha
Helix 65	AH2	B	1162	1187	Right-handed alpha

There are 16 sheets in PDB entry 5GWK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	481	486	first strand
Strand 2	A	456	461	parallel
Strand 3	A	535	539	parallel
Strand 4	A	570	573	parallel
Strand 5	A	635	639	anti-parallel
Strand 6	A	692	694	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	586	589	first strand
Strand 2	A	578	581	anti-parallel
Strand 3	A	609	612	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	742	743	first strand
Strand 2	A	807	808	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	828	831	first strand
Strand 2	A	834	838	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	853	856	first strand
Strand 2	A	861	864	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	898	901	first strand
Strand 2	A	906	910	anti-parallel
Strand 3	A	992	996	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	912	915	first strand
Strand 2	A	920	925	anti-parallel
Strand 3	A	968	971	anti-parallel
Strand 4	A	956	959	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1001	1003	first strand
Strand 2	A	1009	1011	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	481	486	first strand
Strand 2	B	456	461	parallel
Strand 3	B	535	539	parallel
Strand 4	B	570	573	parallel
Strand 5	B	635	639	anti-parallel
Strand 6	B	692	694	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	586	589	first strand
Strand 2	B	578	581	anti-parallel
Strand 3	B	609	612	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	742	743	first strand
Strand 2	B	807	810	anti-parallel
Strand 3	B	784	787	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	828	831	first strand
Strand 2	B	834	838	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	853	856	first strand
Strand 2	B	861	864	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	898	901	first strand
Strand 2	B	906	910	anti-parallel
Strand 3	B	992	996	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	912	915	first strand
Strand 2	B	920	925	anti-parallel
Strand 3	B	968	971	anti-parallel
Strand 4	B	956	959	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1001	1003	first strand
Strand 2	B	1009	1011	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GWK

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GWK