Analysis of interatomic Contacts of Structural Units in PDB entry:
5GWO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GWO entry

There are 4 chains in PDB entry 5GWO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 59	PRO 379
B	PRO 59	PRO 379
C	THR 31	VAL 195
D	THR 31	ASP 197

There are 26 helices in PDB entry 5GWO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	89	91	Right-handed 310
Helix 2	AA2	A	93	99	Right-handed alpha
Helix 3	AA3	A	123	149	Right-handed alpha
Helix 4	AA4	A	155	176	Right-handed alpha
Helix 5	AA5	A	242	252	Right-handed alpha
Helix 6	AA6	A	277	280	Right-handed 310
Helix 7	AA7	A	305	310	Right-handed alpha
Helix 8	AA8	A	313	332	Right-handed alpha
Helix 9	AA9	A	347	364	Right-handed alpha
Helix 10	AB1	B	87	91	Right-handed 310
Helix 11	AB2	B	93	99	Right-handed alpha
Helix 12	AB3	B	123	150	Right-handed alpha
Helix 13	AB4	B	155	176	Right-handed alpha
Helix 14	AB5	B	242	252	Right-handed alpha
Helix 15	AB6	B	277	280	Right-handed 310
Helix 16	AB7	B	305	310	Right-handed alpha
Helix 17	AB8	B	313	332	Right-handed alpha
Helix 18	AB9	B	347	364	Right-handed alpha
Helix 19	AC1	C	32	38	Right-handed alpha
Helix 20	AC2	C	58	67	Right-handed alpha
Helix 21	AC3	C	71	75	Right-handed 310
Helix 22	AC4	C	167	192	Right-handed alpha
Helix 23	AC5	D	32	39	Right-handed alpha
Helix 24	AC6	D	58	68	Right-handed alpha
Helix 25	AC7	D	71	75	Right-handed 310
Helix 26	AC8	D	167	195	Right-handed alpha

There are 12 sheets in PDB entry 5GWO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	66	first strand
Strand 2	A	370	376	anti-parallel
Strand 3	A	298	304	anti-parallel
Strand 4	A	222	227	anti-parallel
Strand 5	A	230	233	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	87	first strand
Strand 2	A	108	120	anti-parallel
Strand 3	A	200	201	anti-parallel
Strand 4	A	274	275	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	87	first strand
Strand 2	A	108	120	anti-parallel
Strand 3	A	203	208	anti-parallel
Strand 4	A	212	218	anti-parallel
Strand 5	A	288	293	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	182	first strand
Strand 2	A	189	190	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	258	first strand
Strand 2	A	262	264	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	66	first strand
Strand 2	B	370	376	anti-parallel
Strand 3	B	298	304	anti-parallel
Strand 4	B	222	227	anti-parallel
Strand 5	B	230	233	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	85	first strand
Strand 2	B	110	120	anti-parallel
Strand 3	B	200	201	anti-parallel
Strand 4	B	274	275	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	85	first strand
Strand 2	B	110	120	anti-parallel
Strand 3	B	203	208	anti-parallel
Strand 4	B	212	218	anti-parallel
Strand 5	B	288	293	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	182	first strand
Strand 2	B	189	190	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	258	first strand
Strand 2	B	262	264	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	55	first strand
Strand 2	C	149	161	anti-parallel
Strand 3	C	136	146	anti-parallel
Strand 4	C	120	128	anti-parallel
Strand 5	C	106	115	anti-parallel
Strand 6	C	93	98	anti-parallel
Strand 7	C	79	84	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	55	first strand
Strand 2	D	149	161	anti-parallel
Strand 3	D	136	146	anti-parallel
Strand 4	D	120	128	anti-parallel
Strand 5	D	106	115	anti-parallel
Strand 6	D	93	98	anti-parallel
Strand 7	D	79	83	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GWO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GWO