Analysis of interatomic Contacts of Structural Units in PDB entry:
5GWT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GWT entry

There are 4 chains in PDB entry 5GWT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5ASN 247
B
 LYS 5ASN 247
C
 LYS 5ASN 247
D
 LYS 5ASN 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 5GWT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 27Right-handed alpha
Helix 2
AA2
A
41 46Right-handed alpha
Helix 3
AA3
A
60 74Right-handed alpha
Helix 4
AA4
A
92 96Right-handed 310
Helix 5
AA5
A
97 109Right-handed alpha
Helix 6
AA6
A
109 126Right-handed alpha
Helix 7
AA7
A
137 141Right-handed 310
Helix 8
AA8
A
147 169Right-handed alpha
Helix 9
AA9
A
170 172Right-handed 310
Helix 10
AB1
A
188 193Right-handed 310
Helix 11
AB2
A
194 204Right-handed alpha
Helix 12
AB3
A
212 225Right-handed alpha
Helix 13
AB4
A
226 229Right-handed 310
Helix 14
AB5
B
14 27Right-handed alpha
Helix 15
AB6
B
41 47Right-handed alpha
Helix 16
AB7
B
60 75Right-handed alpha
Helix 17
AB8
B
92 96Right-handed 310
Helix 18
AB9
B
97 109Right-handed alpha
Helix 19
AC1
B
109 127Right-handed alpha
Helix 20
AC2
B
137 141Right-handed 310
Helix 21
AC3
B
147 169Right-handed alpha
Helix 22
AC4
B
170 172Right-handed 310
Helix 23
AC5
B
188 193Right-handed 310
Helix 24
AC6
B
194 204Right-handed alpha
Helix 25
AC7
B
212 225Right-handed alpha
Helix 26
AC8
B
226 229Right-handed 310
Helix 27
AC9
C
14 27Right-handed alpha
Helix 28
AD1
C
41 47Right-handed alpha
Helix 29
AD2
C
60 74Right-handed alpha
Helix 30
AD3
C
92 96Right-handed 310
Helix 31
AD4
C
97 109Right-handed alpha
Helix 32
AD5
C
109 127Right-handed alpha
Helix 33
AD6
C
137 141Right-handed 310
Helix 34
AD7
C
147 169Right-handed alpha
Helix 35
AD8
C
170 172Right-handed 310
Helix 36
AD9
C
188 193Right-handed 310
Helix 37
AE1
C
194 204Right-handed alpha
Helix 38
AE2
C
212 225Right-handed alpha
Helix 39
AE3
C
226 229Right-handed 310
Helix 40
AE4
D
14 27Right-handed alpha
Helix 41
AE5
D
41 47Right-handed alpha
Helix 42
AE6
D
60 74Right-handed alpha
Helix 43
AE7
D
92 96Right-handed 310
Helix 44
AE8
D
97 109Right-handed alpha
Helix 45
AE9
D
109 126Right-handed alpha
Helix 46
AF1
D
137 141Right-handed 310
Helix 47
AF2
D
147 169Right-handed alpha
Helix 48
AF3
D
188 193Right-handed 310
Helix 49
AF4
D
194 204Right-handed alpha
Helix 50
AF5
D
212 225Right-handed alpha
Helix 51
AF6
D
226 229Right-handed 310
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There are 4 sheets in PDB entry 5GWT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
30 35parallel
Strand 3
A
6 10parallel
Strand 4
A
80 83parallel
Strand 5
A
131 135parallel
Strand 6
A
174 180parallel
Strand 7
A
235 238parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 55first strand
Strand 2
B
30 35parallel
Strand 3
B
6 10parallel
Strand 4
B
80 83parallel
Strand 5
B
131 135parallel
Strand 6
B
174 180parallel
Strand 7
B
235 238parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 55first strand
Strand 2
C
30 35parallel
Strand 3
C
6 10parallel
Strand 4
C
80 83parallel
Strand 5
C
131 135parallel
Strand 6
C
174 180parallel
Strand 7
C
235 238parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 55first strand
Strand 2
D
30 35parallel
Strand 3
D
6 10parallel
Strand 4
D
80 83parallel
Strand 5
D
130 135parallel
Strand 6
D
173 180parallel
Strand 7
D
235 238parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il