Analysis of interatomic Contacts of Structural Units in PDB entry:
5GX7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GX7 entry

There are 3 chains in PDB entry 5GX7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 27	PHE 500
B	PRO 27	PHE 500
C	PRO 27	PHE 500

There are 71 helices in PDB entry 5GX7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	56	Right-handed alpha
Helix 2	AA2	A	69	78	Right-handed alpha
Helix 3	AA3	A	91	101	Right-handed alpha
Helix 4	AA4	A	107	115	Right-handed alpha
Helix 5	AA5	A	115	125	Right-handed alpha
Helix 6	AA6	A	125	133	Right-handed alpha
Helix 7	AA7	A	161	167	Right-handed alpha
Helix 8	AA8	A	174	188	Right-handed alpha
Helix 9	AA9	A	207	217	Right-handed alpha
Helix 10	AB1	A	218	220	Right-handed 310
Helix 11	AB2	A	238	254	Right-handed alpha
Helix 12	AB3	A	267	275	Right-handed alpha
Helix 13	AB4	A	285	290	Right-handed alpha
Helix 14	AB5	A	290	295	Right-handed alpha
Helix 15	AB6	A	337	348	Right-handed alpha
Helix 16	AB7	A	350	360	Right-handed alpha
Helix 17	AB8	A	376	381	Right-handed alpha
Helix 18	AB9	A	387	395	Right-handed alpha
Helix 19	AC1	A	406	414	Right-handed alpha
Helix 20	AC2	A	415	428	Right-handed alpha
Helix 21	AC3	A	441	468	Right-handed alpha
Helix 22	AC4	A	472	487	Right-handed alpha
Helix 23	AC5	A	488	500	Right-handed alpha
Helix 24	AC6	B	45	56	Right-handed alpha
Helix 25	AC7	B	69	80	Right-handed alpha
Helix 26	AC8	B	91	101	Right-handed alpha
Helix 27	AC9	B	107	115	Right-handed alpha
Helix 28	AD1	B	115	125	Right-handed alpha
Helix 29	AD2	B	125	133	Right-handed alpha
Helix 30	AD3	B	161	167	Right-handed alpha
Helix 31	AD4	B	174	188	Right-handed alpha
Helix 32	AD5	B	207	217	Right-handed alpha
Helix 33	AD6	B	218	220	Right-handed 310
Helix 34	AD7	B	238	254	Right-handed alpha
Helix 35	AD8	B	264	266	Right-handed 310
Helix 36	AD9	B	267	275	Right-handed alpha
Helix 37	AE1	B	285	289	Right-handed alpha
Helix 38	AE2	B	290	295	Right-handed alpha
Helix 39	AE3	B	337	348	Right-handed alpha
Helix 40	AE4	B	350	360	Right-handed alpha
Helix 41	AE5	B	376	381	Right-handed alpha
Helix 42	AE6	B	387	395	Right-handed alpha
Helix 43	AE7	B	406	414	Right-handed alpha
Helix 44	AE8	B	415	428	Right-handed alpha
Helix 45	AE9	B	441	468	Right-handed alpha
Helix 46	AF1	B	472	488	Right-handed alpha
Helix 47	AF2	B	488	499	Right-handed alpha
Helix 48	AF3	C	45	56	Right-handed alpha
Helix 49	AF4	C	69	79	Right-handed alpha
Helix 50	AF5	C	91	101	Right-handed alpha
Helix 51	AF6	C	107	115	Right-handed alpha
Helix 52	AF7	C	115	125	Right-handed alpha
Helix 53	AF8	C	125	133	Right-handed alpha
Helix 54	AF9	C	161	167	Right-handed alpha
Helix 55	AG1	C	174	188	Right-handed alpha
Helix 56	AG2	C	207	217	Right-handed alpha
Helix 57	AG3	C	218	220	Right-handed 310
Helix 58	AG4	C	238	254	Right-handed alpha
Helix 59	AG5	C	264	266	Right-handed 310
Helix 60	AG6	C	267	275	Right-handed alpha
Helix 61	AG7	C	285	290	Right-handed alpha
Helix 62	AG8	C	290	295	Right-handed alpha
Helix 63	AG9	C	337	348	Right-handed alpha
Helix 64	AH1	C	350	360	Right-handed alpha
Helix 65	AH2	C	376	381	Right-handed alpha
Helix 66	AH3	C	387	395	Right-handed alpha
Helix 67	AH4	C	406	414	Right-handed alpha
Helix 68	AH5	C	415	428	Right-handed alpha
Helix 69	AH6	C	441	468	Right-handed alpha
Helix 70	AH7	C	472	487	Right-handed alpha
Helix 71	AH8	C	488	499	Right-handed alpha

There are 15 sheets in PDB entry 5GX7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	61	first strand
Strand 2	A	29	33	parallel
Strand 3	A	86	89	parallel
Strand 4	A	325	331	anti-parallel
Strand 5	A	142	145	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	36	first strand
Strand 2	A	39	40	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	284	first strand
Strand 2	A	155	160	anti-parallel
Strand 3	A	304	307	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	228	first strand
Strand 2	A	231	234	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	369	first strand
Strand 2	A	372	375	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	61	first strand
Strand 2	B	28	33	parallel
Strand 3	B	86	89	parallel
Strand 4	B	325	331	anti-parallel
Strand 5	B	142	145	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	36	first strand
Strand 2	B	39	40	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	202	first strand
Strand 2	B	278	284	parallel
Strand 3	B	155	160	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	228	first strand
Strand 2	B	231	234	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	369	first strand
Strand 2	B	372	375	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	61	first strand
Strand 2	C	28	33	parallel
Strand 3	C	86	89	parallel
Strand 4	C	325	331	anti-parallel
Strand 5	C	142	145	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	36	first strand
Strand 2	C	39	40	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	202	first strand
Strand 2	C	278	284	parallel
Strand 3	C	155	160	anti-parallel
Strand 4	C	304	307	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	228	first strand
Strand 2	C	231	234	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	366	369	first strand
Strand 2	C	372	375	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GX7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GX7