Analysis of interatomic Contacts of Structural Units in PDB entry:
5GX8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GX8 entry

There are 2 chains in PDB entry 5GX8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 28PHE 500
B
 LYS 28PHE 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 5GX8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 56Right-handed alpha
Helix 2
AA2
A
69 79Right-handed alpha
Helix 3
AA3
A
91 101Right-handed alpha
Helix 4
AA4
A
107 115Right-handed alpha
Helix 5
AA5
A
115 125Right-handed alpha
Helix 6
AA6
A
125 133Right-handed alpha
Helix 7
AA7
A
161 167Right-handed alpha
Helix 8
AA8
A
174 188Right-handed alpha
Helix 9
AA9
A
207 217Right-handed alpha
Helix 10
AB1
A
218 220Right-handed 310
Helix 11
AB2
A
238 254Right-handed alpha
Helix 12
AB3
A
267 275Right-handed alpha
Helix 13
AB4
A
285 289Right-handed alpha
Helix 14
AB5
A
290 296Right-handed alpha
Helix 15
AB6
A
337 348Right-handed alpha
Helix 16
AB7
A
350 360Right-handed alpha
Helix 17
AB8
A
376 381Right-handed alpha
Helix 18
AB9
A
387 395Right-handed alpha
Helix 19
AC1
A
406 412Right-handed alpha
Helix 20
AC2
A
415 428Right-handed alpha
Helix 21
AC3
A
441 468Right-handed alpha
Helix 22
AC4
A
472 488Right-handed alpha
Helix 23
AC5
A
488 500Right-handed alpha
Helix 24
AC6
B
45 56Right-handed alpha
Helix 25
AC7
B
69 78Right-handed alpha
Helix 26
AC8
B
91 101Right-handed alpha
Helix 27
AC9
B
107 115Right-handed alpha
Helix 28
AD1
B
115 125Right-handed alpha
Helix 29
AD2
B
125 133Right-handed alpha
Helix 30
AD3
B
161 168Right-handed alpha
Helix 31
AD4
B
174 188Right-handed alpha
Helix 32
AD5
B
207 217Right-handed alpha
Helix 33
AD6
B
218 220Right-handed 310
Helix 34
AD7
B
238 254Right-handed alpha
Helix 35
AD8
B
267 275Right-handed alpha
Helix 36
AD9
B
285 289Right-handed alpha
Helix 37
AE1
B
290 296Right-handed alpha
Helix 38
AE2
B
337 348Right-handed alpha
Helix 39
AE3
B
350 360Right-handed alpha
Helix 40
AE4
B
376 381Right-handed alpha
Helix 41
AE5
B
387 395Right-handed alpha
Helix 42
AE6
B
406 412Right-handed alpha
Helix 43
AE7
B
415 428Right-handed alpha
Helix 44
AE8
B
441 468Right-handed alpha
Helix 45
AE9
B
472 488Right-handed alpha
Helix 46
AF1
B
488 500Right-handed alpha
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There are 10 sheets in PDB entry 5GX8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
29 33parallel
Strand 3
A
86 89parallel
Strand 4
A
325 331anti-parallel
Strand 5
A
142 145anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
39 40anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 202first strand
Strand 2
A
278 284parallel
Strand 3
A
155 160anti-parallel
Strand 4
A
304 307anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 228first strand
Strand 2
A
231 234anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 369first strand
Strand 2
A
372 375anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 61first strand
Strand 2
B
29 33parallel
Strand 3
B
86 89parallel
Strand 4
B
325 331anti-parallel
Strand 5
B
142 145anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
B
39 40anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
280 284first strand
Strand 2
B
155 160anti-parallel
Strand 3
B
304 307anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 228first strand
Strand 2
B
231 234anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
366 369first strand
Strand 2
B
372 375anti-parallel
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