Analysis of interatomic Contacts of Structural Units in PDB entry:
5GXB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GXB entry

There are 2 chains in PDB entry 5GXB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 6LEU 408
B
 MET 0HIS 131
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5GXB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 27Right-handed alpha
Helix 2
AA2
A
29 36Right-handed alpha
Helix 3
AA3
A
44 70Right-handed alpha
Helix 4
AA4
A
74 84Right-handed alpha
Helix 5
AA5
A
86 94Right-handed alpha
Helix 6
AA6
A
103 111Right-handed alpha
Helix 7
AA7
A
111 118Right-handed alpha
Helix 8
AA8
A
121 133Right-handed alpha
Helix 9
AA9
A
140 161Right-handed alpha
Helix 10
AB1
A
162 164Right-handed 310
Helix 11
AB2
A
167 187Right-handed alpha
Helix 12
AB3
A
209 214Right-handed alpha
Helix 13
AB4
A
215 218Right-handed 310
Helix 14
AB5
A
219 240Right-handed alpha
Helix 15
AB6
A
242 248Right-handed alpha
Helix 16
AB7
A
249 251Right-handed 310
Helix 17
AB8
A
253 287Right-handed alpha
Helix 18
AB9
A
287 306Right-handed alpha
Helix 19
AC1
A
311 341Right-handed alpha
Helix 20
AC2
A
342 344Right-handed 310
Helix 21
AC3
A
345 354Right-handed alpha
Helix 22
AC4
A
355 363Right-handed alpha
Helix 23
AC5
A
363 377Right-handed alpha
Helix 24
AC6
A
378 396Right-handed alpha
Helix 25
AC7
B
62 65Right-handed 310
Helix 26
AC8
B
74 76Right-handed 310
Helix 27
AC9
B
112 116Right-handed 310
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There are 3 sheets in PDB entry 5GXB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
18 24anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
126 127parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
45 51anti-parallel
Strand 3
B
34 39anti-parallel
Strand 4
B
93 98anti-parallel
Strand 5
B
118 119anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il