Analysis of interatomic Contacts of Structural Units in PDB entry:
5GXD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GXD entry

There is 1 chain in PDB entry 5GXD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2PRO 628
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5GXD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 13Right-handed alpha
Helix 2
AA2
A
13 23Right-handed alpha
Helix 3
AA3
A
52 58Right-handed alpha
Helix 4
AA4
A
58 64Right-handed alpha
Helix 5
AA5
A
77 80Right-handed 310
Helix 6
AA6
A
87 104Right-handed alpha
Helix 7
AA7
A
119 133Right-handed alpha
Helix 8
AA8
A
144 156Right-handed alpha
Helix 9
AA9
A
174 186Right-handed alpha
Helix 10
AB1
A
214 218Right-handed 310
Helix 11
AB2
A
253 267Right-handed alpha
Helix 12
AB3
A
284 291Right-handed alpha
Helix 13
AB4
A
292 298Right-handed alpha
Helix 14
AB5
A
316 326Right-handed alpha
Helix 15
AB6
A
333 344Right-handed alpha
Helix 16
AB7
A
349 353Right-handed 310
Helix 17
AB8
A
369 381Right-handed alpha
Helix 18
AB9
A
458 468Right-handed alpha
Helix 19
AC1
A
507 515Right-handed alpha
Helix 20
AC2
A
550 566Right-handed alpha
Helix 21
AC3
A
567 571Right-handed 310
Helix 22
AC4
A
590 600Right-handed alpha
Helix 23
AC5
A
613 625Right-handed alpha
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There are 10 sheets in PDB entry 5GXD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
44 45anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
228 229anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 86first strand
Strand 2
A
70 76anti-parallel
Strand 3
A
301 305parallel
Strand 4
A
275 278parallel
Strand 5
A
327 332parallel
Strand 6
A
360 363parallel
Strand 7
A
384 386parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 138first strand
Strand 2
A
111 115parallel
Strand 3
A
159 163parallel
Strand 4
A
192 196parallel
Strand 5
A
210 212parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
171 173anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 239first strand
Strand 2
A
247 252anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 399first strand
Strand 2
A
416 417anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 426first strand
Strand 2
A
439 444anti-parallel
Strand 3
A
473 482anti-parallel
Strand 4
A
488 493anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
497 500first strand
Strand 2
A
503 506anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 530first strand
Strand 2
A
534 543anti-parallel
Strand 3
A
574 577parallel
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