Analysis of interatomic Contacts of Structural Units in PDB entry:
5GXF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GXF entry

There are 2 chains in PDB entry 5GXF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 330
B
 MET 1ALA 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5GXF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 28Right-handed 310
Helix 2
AA2
A
43 51Right-handed alpha
Helix 3
AA3
A
108 110Right-handed 310
Helix 4
AA4
A
120 144Right-handed alpha
Helix 5
AA5
A
160 173Right-handed alpha
Helix 6
AA6
A
183 185Right-handed 310
Helix 7
AA7
A
186 194Right-handed alpha
Helix 8
AA8
A
202 204Right-handed 310
Helix 9
AA9
A
225 234Right-handed alpha
Helix 10
AB1
A
257 264Right-handed alpha
Helix 11
AB2
A
276 291Right-handed alpha
Helix 12
AB3
A
292 299Right-handed alpha
Helix 13
AB4
A
304 306Right-handed 310
Helix 14
AB5
A
307 317Right-handed alpha
Helix 15
AB6
B
24 28Right-handed 310
Helix 16
AB7
B
43 51Right-handed alpha
Helix 17
AB8
B
108 110Right-handed 310
Helix 18
AB9
B
120 144Right-handed alpha
Helix 19
AC1
B
160 174Right-handed alpha
Helix 20
AC2
B
183 185Right-handed 310
Helix 21
AC3
B
186 194Right-handed alpha
Helix 22
AC4
B
202 204Right-handed 310
Helix 23
AC5
B
225 234Right-handed alpha
Helix 24
AC6
B
257 264Right-handed alpha
Helix 25
AC7
B
276 291Right-handed alpha
Helix 26
AC8
B
292 299Right-handed alpha
Helix 27
AC9
B
304 306Right-handed 310
Helix 28
AD1
B
307 317Right-handed alpha
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There are 8 sheets in PDB entry 5GXF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 10first strand
Strand 2
A
15 23anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
33 41anti-parallel
Strand 3
A
67 75anti-parallel
Strand 4
A
85 89anti-parallel
Strand 5
A
112 114anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
33 41anti-parallel
Strand 3
A
323 327anti-parallel
Strand 4
A
300 303parallel
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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 200first strand
Strand 2
A
177 181parallel
Strand 3
A
153 155parallel
Strand 4
A
219 222parallel
Strand 5
A
241 244parallel
Strand 6
A
266 269parallel
Strand 7
B
266 269anti-parallel
Strand 8
B
241 244parallel
Strand 9
B
219 222parallel
Strand 10
B
153 155parallel
Strand 11
B
177 181parallel
Strand 12
B
197 200parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 256first strand
Strand 2
B
252 256anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 9first strand
Strand 2
B
16 23anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 107first strand
Strand 2
B
33 41anti-parallel
Strand 3
B
67 75anti-parallel
Strand 4
B
85 89anti-parallel
Strand 5
B
112 114anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 107first strand
Strand 2
B
33 41anti-parallel
Strand 3
B
323 327anti-parallel
Strand 4
B
300 303parallel
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