Analysis of interatomic Contacts of Structural Units in PDB entry:
5GXG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GXG entry

There are 2 chains in PDB entry 5GXG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 10VAL 414
B
 SER 1TRP 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5GXG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 23Right-handed 310
Helix 2
AA2
A
33 36Right-handed 310
Helix 3
AA3
A
37 43Right-handed alpha
Helix 4
AA4
A
44 47Right-handed 310
Helix 5
AA5
A
57 61Right-handed 310
Helix 6
AA6
A
67 76Right-handed alpha
Helix 7
AA7
A
106 120Right-handed alpha
Helix 8
AA8
A
120 143Right-handed alpha
Helix 9
AA9
A
150 154Right-handed alpha
Helix 10
AB1
A
156 168Right-handed alpha
Helix 11
AB2
A
170 172Right-handed 310
Helix 12
AB3
A
173 186Right-handed alpha
Helix 13
AB4
A
192 214Right-handed alpha
Helix 14
AB5
A
218 225Right-handed alpha
Helix 15
AB6
A
234 249Right-handed alpha
Helix 16
AB7
A
250 267Right-handed alpha
Helix 17
AB8
A
267 277Right-handed alpha
Helix 18
AB9
A
280 292Right-handed alpha
Helix 19
AC1
A
321 328Right-handed 310
Helix 20
AC2
A
352 356Right-handed 310
Helix 21
AC3
A
359 378Right-handed alpha
Helix 22
AC4
A
407 411Right-handed 310
Helix 23
AC5
B
22 30Right-handed alpha
Helix 24
AC6
B
64 72Right-handed alpha
Helix 25
AC7
B
86 88Right-handed 310
Helix 26
AC8
B
91 95Right-handed 310
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There are 6 sheets in PDB entry 5GXG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
62 65anti-parallel
Strand 3
A
317 319parallel
Strand 4
A
298 301anti-parallel
Strand 5
A
81 82anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 149first strand
Strand 2
A
403 405anti-parallel
Strand 3
A
382 383anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
231 232anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 307first strand
Strand 2
A
310 312anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 392first strand
Strand 2
A
398 399anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
97 100parallel
Strand 4
B
49 52anti-parallel
Strand 5
B
82 84anti-parallel
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