Analysis of interatomic Contacts of Structural Units in PDB entry:
5GXO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GXO entry

There are 4 chains in PDB entry 5GXO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 25GLU 67
A
 TYR 69LYS 221
B
 LYS 25GLU 67
B
 TYR 69LYS 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5GXO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 53Right-handed alpha
Helix 2
AA2
A
53 75Right-handed alpha
Helix 3
AA3
A
77 104Right-handed alpha
Helix 4
AA4
A
115 126Right-handed alpha
Helix 5
AA5
A
127 141Right-handed alpha
Helix 6
AA6
A
169 175Right-handed alpha
Helix 7
AA7
A
185 188Right-handed 310
Helix 8
AA8
A
189 194Right-handed alpha
Helix 9
AA9
A
196 205Right-handed alpha
Helix 10
AB1
A
206 208Right-handed 310
Helix 11
AB2
A
209 219Right-handed alpha
Helix 12
AB3
B
43 53Right-handed alpha
Helix 13
AB4
B
53 75Right-handed alpha
Helix 14
AB5
B
77 84Right-handed alpha
Helix 15
AB6
B
84 105Right-handed alpha
Helix 16
AB7
B
114 126Right-handed alpha
Helix 17
AB8
B
127 142Right-handed alpha
Helix 18
AB9
B
169 175Right-handed alpha
Helix 19
AC1
B
185 188Right-handed 310
Helix 20
AC2
B
189 194Right-handed alpha
Helix 21
AC3
B
196 205Right-handed alpha
Helix 22
AC4
B
206 208Right-handed 310
Helix 23
AC5
B
209 221Right-handed alpha
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There are 2 sheets in PDB entry 5GXO. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 165first strand
Strand 2
A
146 153anti-parallel
Strand 3
A
177 183anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 165first strand
Strand 2
B
146 153anti-parallel
Strand 3
B
177 183anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il