Analysis of interatomic Contacts of Structural Units in PDB entry:
5GXU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GXU entry

There are 2 chains in PDB entry 5GXU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 103TRP 711
B
 TYR 304TRP 711
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5GXU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
114 131Right-handed alpha
Helix 2
AA2
A
141 145Right-handed alpha
Helix 3
AA3
A
147 156Right-handed alpha
Helix 4
AA4
A
169 171Right-handed 310
Helix 5
AA5
A
177 186Right-handed alpha
Helix 6
AA6
A
213 226Right-handed alpha
Helix 7
AA7
A
242 260Right-handed alpha
Helix 8
AA8
A
359 371Right-handed alpha
Helix 9
AA9
A
402 410Right-handed alpha
Helix 10
AB1
A
418 427Right-handed alpha
Helix 11
AB2
A
431 443Right-handed alpha
Helix 12
AB3
A
446 454Right-handed alpha
Helix 13
AB4
A
460 468Right-handed alpha
Helix 14
AB5
A
474 479Right-handed alpha
Helix 15
AB6
A
523 532Right-handed alpha
Helix 16
AB7
A
568 571Right-handed 310
Helix 17
AB8
A
572 587Right-handed alpha
Helix 18
AB9
A
610 620Right-handed alpha
Helix 19
AC1
A
639 647Right-handed alpha
Helix 20
AC2
A
647 657Right-handed alpha
Helix 21
AC3
A
669 687Right-handed alpha
Helix 22
AC4
A
689 704Right-handed alpha
Helix 23
AC5
B
359 371Right-handed alpha
Helix 24
AC6
B
403 410Right-handed alpha
Helix 25
AC7
B
418 427Right-handed alpha
Helix 26
AC8
B
431 442Right-handed alpha
Helix 27
AC9
B
443 445Right-handed 310
Helix 28
AD1
B
446 454Right-handed alpha
Helix 29
AD2
B
460 468Right-handed alpha
Helix 30
AD3
B
474 482Right-handed alpha
Helix 31
AD4
B
523 532Right-handed alpha
Helix 32
AD5
B
568 571Right-handed 310
Helix 33
AD6
B
572 586Right-handed alpha
Helix 34
AD7
B
610 620Right-handed alpha
Helix 35
AD8
B
639 647Right-handed alpha
Helix 36
AD9
B
647 657Right-handed alpha
Helix 37
AE1
B
669 686Right-handed alpha
Helix 38
AE2
B
689 703Right-handed alpha
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There are 9 sheets in PDB entry 5GXU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 140first strand
Strand 2
A
104 110parallel
Strand 3
A
160 168parallel
Strand 4
A
198 205parallel
Strand 5
A
229 230parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
160 168anti-parallel
Strand 3
A
198 205parallel
Strand 4
A
235 238parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 492first strand
Strand 2
A
351 354anti-parallel
Strand 3
A
543 549anti-parallel
Strand 4
A
313 322anti-parallel
Strand 5
A
332 338anti-parallel
Strand 6
A
503 509anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 514first strand
Strand 2
A
520 522anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
625 630first strand
Strand 2
A
595 601parallel
Strand 3
A
563 566parallel
Strand 4
A
660 665parallel
Strand 5
A
706 710parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
489 492first strand
Strand 2
B
351 354anti-parallel
Strand 3
B
543 549anti-parallel
Strand 4
B
313 322anti-parallel
Strand 5
B
332 338anti-parallel
Strand 6
B
503 509anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
377 378first strand
Strand 2
B
401 402anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
512 514first strand
Strand 2
B
520 522anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
625 630first strand
Strand 2
B
595 601parallel
Strand 3
B
563 566parallel
Strand 4
B
660 665parallel
Strand 5
B
706 710parallel
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