Analysis of interatomic Contacts of Structural Units in PDB entry:
5GXX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GXX entry

There are 2 chains in PDB entry 5GXX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 30LEU 629
B
 SER 30GLY 628
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 5GXX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 47Right-handed alpha
Helix 2
AA2
A
84 102Right-handed alpha
Helix 3
AA3
A
103 109Right-handed 310
Helix 4
AA4
A
110 128Right-handed alpha
Helix 5
AA5
A
140 147Right-handed alpha
Helix 6
AA6
A
150 152Right-handed 310
Helix 7
AA7
A
153 158Right-handed alpha
Helix 8
AA8
A
167 185Right-handed alpha
Helix 9
AA9
A
187 205Right-handed alpha
Helix 10
AB1
A
223 239Right-handed alpha
Helix 11
AB2
A
240 251Right-handed alpha
Helix 12
AB3
A
252 254Right-handed 310
Helix 13
AB4
A
274 287Right-handed alpha
Helix 14
AB5
A
288 303Right-handed alpha
Helix 15
AB6
A
326 345Right-handed alpha
Helix 16
AB7
A
347 367Right-handed alpha
Helix 17
AB8
A
389 394Right-handed alpha
Helix 18
AB9
A
437 456Right-handed alpha
Helix 19
AC1
A
515 521Right-handed alpha
Helix 20
AC2
A
524 528Right-handed 310
Helix 21
AC3
A
562 566Right-handed 310
Helix 22
AC4
A
592 600Right-handed 310
Helix 23
AC5
B
32 47Right-handed alpha
Helix 24
AC6
B
84 102Right-handed alpha
Helix 25
AC7
B
103 105Right-handed 310
Helix 26
AC8
B
110 128Right-handed alpha
Helix 27
AC9
B
140 147Right-handed alpha
Helix 28
AD1
B
150 157Right-handed 310
Helix 29
AD2
B
167 185Right-handed alpha
Helix 30
AD3
B
187 205Right-handed alpha
Helix 31
AD4
B
223 239Right-handed alpha
Helix 32
AD5
B
240 251Right-handed alpha
Helix 33
AD6
B
252 254Right-handed 310
Helix 34
AD7
B
274 287Right-handed alpha
Helix 35
AD8
B
288 303Right-handed alpha
Helix 36
AD9
B
326 345Right-handed alpha
Helix 37
AE1
B
347 367Right-handed alpha
Helix 38
AE2
B
389 394Right-handed alpha
Helix 39
AE3
B
437 456Right-handed alpha
Helix 40
AE4
B
515 521Right-handed alpha
Helix 41
AE5
B
524 528Right-handed 310
Helix 42
AE6
B
562 566Right-handed 310
Helix 43
AE7
B
592 600Right-handed 310
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There are 8 sheets in PDB entry 5GXX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
134 138anti-parallel
Strand 3
A
162 165anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
529 535first strand
Strand 2
A
575 583anti-parallel
Strand 3
A
486 495anti-parallel
Strand 4
A
473 482anti-parallel
Strand 5
A
607 609anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 543first strand
Strand 2
A
553 560anti-parallel
Strand 3
A
547 550anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 543first strand
Strand 2
A
553 560anti-parallel
Strand 3
A
507 514anti-parallel
Strand 4
A
614 616anti-parallel
Strand 5
A
619 622anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 83first strand
Strand 2
B
134 138anti-parallel
Strand 3
B
162 165anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
529 535first strand
Strand 2
B
575 583anti-parallel
Strand 3
B
486 495anti-parallel
Strand 4
B
473 483anti-parallel
Strand 5
B
607 609anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
541 543first strand
Strand 2
B
553 560anti-parallel
Strand 3
B
547 550anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
541 543first strand
Strand 2
B
553 560anti-parallel
Strand 3
B
507 514anti-parallel
Strand 4
B
614 616anti-parallel
Strand 5
B
619 622anti-parallel
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