Analysis of interatomic Contacts of Structural Units in PDB entry:
5GY2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GY2 entry

There are 4 chains in PDB entry 5GY2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 23PRO 464
C
 GLY 54ALA 222
B
 GLU 24PRO 464
D
 GLY 54ALA 222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5GY2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
134 139Right-handed alpha
Helix 2
AA2
A
164 170Right-handed 310
Helix 3
AA3
A
191 195Right-handed 310
Helix 4
AA4
A
216 221Right-handed 310
Helix 5
AA5
A
242 253Right-handed alpha
Helix 6
AA6
A
286 292Right-handed 310
Helix 7
AA7
A
431 441Right-handed alpha
Helix 8
AA8
A
457 461Right-handed 310
Helix 9
AA9
C
55 99Right-handed alpha
Helix 10
AB1
C
106 129Right-handed alpha
Helix 11
AB2
C
166 171Right-handed alpha
Helix 12
AB3
C
184 222Right-handed alpha
Helix 13
AB4
B
134 139Right-handed alpha
Helix 14
AB5
B
164 170Right-handed 310
Helix 15
AB6
B
191 195Right-handed 310
Helix 16
AB7
B
216 222Right-handed 310
Helix 17
AB8
B
242 253Right-handed alpha
Helix 18
AB9
B
286 292Right-handed 310
Helix 19
AC1
B
431 441Right-handed alpha
Helix 20
AC2
B
457 461Right-handed 310
Helix 21
AC3
D
55 99Right-handed alpha
Helix 22
AC4
D
106 129Right-handed alpha
Helix 23
AC5
D
166 171Right-handed alpha
Helix 24
AC6
D
184 222Right-handed alpha
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There are 10 sheets in PDB entry 5GY2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 17 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
31 33anti-parallel
Strand 3
A
51 53parallel
Strand 4
A
75 77parallel
Strand 5
A
100 102parallel
Strand 6
A
124 126parallel
Strand 7
A
150 152parallel
Strand 8
A
175 177parallel
Strand 9
A
198 203parallel
Strand 10
A
230 235parallel
Strand 11
A
257 262parallel
Strand 12
A
296 298parallel
Strand 13
A
320 322parallel
Strand 14
A
344 346parallel
Strand 15
A
368 370parallel
Strand 16
A
392 394parallel
Strand 17
A
416 418parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
86 87parallel
Strand 3
A
110 111parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 307first strand
Strand 2
A
330 331parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 131first strand
Strand 2
C
134 135anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
146 149first strand
Strand 2
C
157 160anti-parallel
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There are 17 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
31 33anti-parallel
Strand 3
B
51 53parallel
Strand 4
B
75 77parallel
Strand 5
B
100 102parallel
Strand 6
B
124 126parallel
Strand 7
B
150 152parallel
Strand 8
B
175 177parallel
Strand 9
B
198 203parallel
Strand 10
B
230 235parallel
Strand 11
B
257 262parallel
Strand 12
B
296 298parallel
Strand 13
B
320 322parallel
Strand 14
B
344 346parallel
Strand 15
B
368 370parallel
Strand 16
B
392 394parallel
Strand 17
B
416 418parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 62first strand
Strand 2
B
86 87parallel
Strand 3
B
110 111parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 307first strand
Strand 2
B
330 331parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
130 131first strand
Strand 2
D
134 135anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
146 149first strand
Strand 2
D
157 160anti-parallel
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