Analysis of interatomic Contacts of Structural Units in PDB entry:
5GYC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GYC entry

There is 1 chain in PDB entry 5GYC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4HIS 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 5GYC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 19Right-handed 310
Helix 2
AA2
A
95 100Right-handed 310
Helix 3
AA3
A
135 138Right-handed 310
Helix 4
AA4
A
162 167Right-handed alpha
Helix 5
AA5
A
218 228Right-handed alpha
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There are 4 sheets in PDB entry 5GYC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
57 61anti-parallel
Strand 3
A
72 77anti-parallel
Strand 4
A
249 262anti-parallel
Strand 5
A
101 110anti-parallel
Strand 6
A
213 217anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
57 61anti-parallel
Strand 3
A
72 77anti-parallel
Strand 4
A
249 262anti-parallel
Strand 5
A
268 271anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
45 49anti-parallel
Strand 3
A
82 89anti-parallel
Strand 4
A
238 245anti-parallel
Strand 5
A
120 129anti-parallel
Strand 6
A
140 148anti-parallel
Strand 7
A
198 207parallel
Strand 8
A
179 191anti-parallel
Strand 9
A
169 176anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
45 49anti-parallel
Strand 3
A
82 89anti-parallel
Strand 4
A
238 245anti-parallel
Strand 5
A
120 129anti-parallel
Strand 6
A
235 236anti-parallel
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