Analysis of interatomic Contacts of Structural Units in PDB entry:
5GYK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GYK entry

There are 6 chains in PDB entry 5GYK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 0	ASN 267
B	GLY 0	LEU 264
C	GLY 0	ASN 267
D	GLY 0	ASN 267
E	GLY 0	PHE 266
F	GLY 0	LEU 162

There are 37 helices in PDB entry 5GYK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	29	Right-handed alpha
Helix 2	AA2	A	63	69	Right-handed alpha
Helix 3	AA3	A	185	192	Right-handed 310
Helix 4	AA4	A	199	204	Right-handed alpha
Helix 5	AA5	A	224	228	Right-handed 310
Helix 6	AA6	A	230	257	Right-handed alpha
Helix 7	AA7	B	12	29	Right-handed alpha
Helix 8	AA8	B	63	72	Right-handed alpha
Helix 9	AA9	B	185	192	Right-handed 310
Helix 10	AB1	B	199	204	Right-handed alpha
Helix 11	AB2	B	206	210	Right-handed 310
Helix 12	AB3	B	230	256	Right-handed alpha
Helix 13	AB4	C	12	29	Right-handed alpha
Helix 14	AB5	C	63	68	Right-handed alpha
Helix 15	AB6	C	188	192	Right-handed 310
Helix 16	AB7	C	199	204	Right-handed alpha
Helix 17	AB8	C	206	210	Right-handed 310
Helix 18	AB9	C	225	228	Right-handed 310
Helix 19	AC1	C	230	256	Right-handed alpha
Helix 20	AC2	D	15	29	Right-handed alpha
Helix 21	AC3	D	63	70	Right-handed alpha
Helix 22	AC4	D	185	189	Right-handed 310
Helix 23	AC5	D	199	204	Right-handed alpha
Helix 24	AC6	D	206	210	Right-handed 310
Helix 25	AC7	D	224	228	Right-handed 310
Helix 26	AC8	D	230	256	Right-handed alpha
Helix 27	AC9	E	12	30	Right-handed alpha
Helix 28	AD1	E	63	72	Right-handed alpha
Helix 29	AD2	E	185	192	Right-handed 310
Helix 30	AD3	E	199	204	Right-handed alpha
Helix 31	AD4	E	224	228	Right-handed 310
Helix 32	AD5	E	230	257	Right-handed alpha
Helix 33	AD6	F	13	29	Right-handed alpha
Helix 34	AD7	F	63	72	Right-handed alpha
Helix 35	AD8	F	185	189	Right-handed 310
Helix 36	AD9	F	199	204	Right-handed alpha
Helix 37	AE1	F	230	257	Right-handed alpha

There are 9 sheets in PDB entry 5GYK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	46	first strand
Strand 2	A	132	141	anti-parallel
Strand 3	A	149	170	anti-parallel
Strand 4	A	175	182	anti-parallel
Strand 5	A	262	264	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	222	first strand
Strand 2	A	149	170	anti-parallel
Strand 3	A	119	127	anti-parallel
Strand 4	A	50	60	anti-parallel
Strand 5	B	1	6	parallel
Strand 6	A	2	6	anti-parallel
Strand 7	B	50	60	parallel
Strand 8	B	119	127	anti-parallel
Strand 9	B	150	170	anti-parallel
Strand 10	B	214	222	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	46	first strand
Strand 2	B	132	140	anti-parallel
Strand 3	B	150	170	anti-parallel
Strand 4	B	175	182	anti-parallel
Strand 5	B	262	264	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	46	first strand
Strand 2	C	132	142	anti-parallel
Strand 3	C	148	171	anti-parallel
Strand 4	C	174	182	anti-parallel
Strand 5	C	262	264	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	223	first strand
Strand 2	C	148	171	anti-parallel
Strand 3	C	119	127	anti-parallel
Strand 4	C	50	60	anti-parallel
Strand 5	D	2	6	parallel
Strand 6	C	1	6	anti-parallel
Strand 7	D	50	60	parallel
Strand 8	D	119	128	anti-parallel
Strand 9	D	147	171	anti-parallel
Strand 10	D	214	222	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	46	first strand
Strand 2	D	132	143	anti-parallel
Strand 3	D	147	171	anti-parallel
Strand 4	D	174	182	anti-parallel
Strand 5	D	262	264	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	46	first strand
Strand 2	E	132	141	anti-parallel
Strand 3	E	149	171	anti-parallel
Strand 4	E	174	181	anti-parallel
Strand 5	E	262	264	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	214	222	first strand
Strand 2	E	149	171	anti-parallel
Strand 3	E	119	127	anti-parallel
Strand 4	E	50	60	anti-parallel
Strand 5	F	1	6	parallel
Strand 6	E	2	6	anti-parallel
Strand 7	F	50	60	parallel
Strand 8	F	119	127	anti-parallel
Strand 9	F	152	170	anti-parallel
Strand 10	F	214	222	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	46	first strand
Strand 2	F	132	139	anti-parallel
Strand 3	F	152	170	anti-parallel
Strand 4	F	175	182	anti-parallel
Strand 5	F	262	264	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GYK

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GYK