Analysis of interatomic Contacts of Structural Units in PDB entry:
5GYL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GYL entry

There are 3 chains in PDB entry 5GYL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 29	ARG 488
B	ASN 29	ARG 488
C	ASN 29	ARG 488

There are 18 helices in PDB entry 5GYL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	66	Right-handed alpha
Helix 2	AA2	A	214	223	Right-handed alpha
Helix 3	AA3	A	225	234	Right-handed alpha
Helix 4	AA4	A	351	357	Right-handed alpha
Helix 5	AA5	A	457	466	Right-handed alpha
Helix 6	AA6	A	468	478	Right-handed alpha
Helix 7	AA7	B	59	66	Right-handed alpha
Helix 8	AA8	B	214	223	Right-handed alpha
Helix 9	AA9	B	225	234	Right-handed alpha
Helix 10	AB1	B	351	357	Right-handed alpha
Helix 11	AB2	B	457	466	Right-handed alpha
Helix 12	AB3	B	468	478	Right-handed alpha
Helix 13	AB4	C	59	66	Right-handed alpha
Helix 14	AB5	C	214	223	Right-handed alpha
Helix 15	AB6	C	225	233	Right-handed alpha
Helix 16	AB7	C	352	357	Right-handed alpha
Helix 17	AB8	C	457	466	Right-handed alpha
Helix 18	AB9	C	468	478	Right-handed alpha

There are 21 sheets in PDB entry 5GYL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	47	first strand
Strand 2	A	50	54	anti-parallel
Strand 3	A	68	74	anti-parallel
Strand 4	A	159	165	anti-parallel
Strand 5	A	89	95	anti-parallel
Strand 6	A	139	143	anti-parallel
Strand 7	A	323	325	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	135	first strand
Strand 2	A	98	103	anti-parallel
Strand 3	A	148	153	anti-parallel
Strand 4	A	78	84	anti-parallel
Strand 5	A	181	182	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	135	first strand
Strand 2	A	98	103	anti-parallel
Strand 3	A	148	153	anti-parallel
Strand 4	A	78	84	anti-parallel
Strand 5	A	244	246	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	113	first strand
Strand 2	A	127	129	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	336	first strand
Strand 2	A	340	345	anti-parallel
Strand 3	A	359	366	anti-parallel
Strand 4	A	429	436	anti-parallel
Strand 5	A	381	387	anti-parallel
Strand 6	A	412	415	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	408	first strand
Strand 2	A	389	395	anti-parallel
Strand 3	A	420	425	anti-parallel
Strand 4	A	370	376	anti-parallel
Strand 5	A	443	445	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	408	first strand
Strand 2	A	389	395	anti-parallel
Strand 3	A	420	425	anti-parallel
Strand 4	A	370	376	anti-parallel
Strand 5	A	484	485	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	47	first strand
Strand 2	B	50	54	anti-parallel
Strand 3	B	68	74	anti-parallel
Strand 4	B	159	165	anti-parallel
Strand 5	B	89	95	anti-parallel
Strand 6	B	139	143	anti-parallel
Strand 7	B	323	325	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	136	first strand
Strand 2	B	97	103	anti-parallel
Strand 3	B	148	153	anti-parallel
Strand 4	B	78	85	anti-parallel
Strand 5	B	180	182	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	136	first strand
Strand 2	B	97	103	anti-parallel
Strand 3	B	148	153	anti-parallel
Strand 4	B	78	85	anti-parallel
Strand 5	B	244	246	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	113	first strand
Strand 2	B	127	129	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	336	first strand
Strand 2	B	340	345	anti-parallel
Strand 3	B	359	366	anti-parallel
Strand 4	B	429	436	anti-parallel
Strand 5	B	381	387	anti-parallel
Strand 6	B	412	415	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	408	first strand
Strand 2	B	389	395	anti-parallel
Strand 3	B	420	425	anti-parallel
Strand 4	B	370	376	anti-parallel
Strand 5	B	443	445	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	408	first strand
Strand 2	B	389	395	anti-parallel
Strand 3	B	420	425	anti-parallel
Strand 4	B	370	376	anti-parallel
Strand 5	B	484	485	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	47	first strand
Strand 2	C	50	54	anti-parallel
Strand 3	C	68	74	anti-parallel
Strand 4	C	159	165	anti-parallel
Strand 5	C	89	95	anti-parallel
Strand 6	C	139	143	anti-parallel
Strand 7	C	323	325	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	135	first strand
Strand 2	C	98	103	anti-parallel
Strand 3	C	148	153	anti-parallel
Strand 4	C	78	85	anti-parallel
Strand 5	C	180	182	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	135	first strand
Strand 2	C	98	103	anti-parallel
Strand 3	C	148	153	anti-parallel
Strand 4	C	78	85	anti-parallel
Strand 5	C	244	246	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	113	first strand
Strand 2	C	127	129	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	334	336	first strand
Strand 2	C	340	345	anti-parallel
Strand 3	C	359	366	anti-parallel
Strand 4	C	429	436	anti-parallel
Strand 5	C	381	387	anti-parallel
Strand 6	C	412	415	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	401	408	first strand
Strand 2	C	389	395	anti-parallel
Strand 3	C	420	425	anti-parallel
Strand 4	C	370	376	anti-parallel
Strand 5	C	443	445	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	401	408	first strand
Strand 2	C	389	395	anti-parallel
Strand 3	C	420	425	anti-parallel
Strand 4	C	370	376	anti-parallel
Strand 5	C	484	485	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GYL

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GYL