Analysis of interatomic Contacts of Structural Units in PDB entry:
5GYY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GYY entry

There are 4 chains in PDB entry 5GYY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -1VAL 398
B
 ALA -4GLU 400
G
 ALA -2ALA 55
H
 ARG 3ALA 56
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5GYY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
121 123Right-handed 310
Helix 2
AA2
A
246 249Right-handed 310
Helix 3
AA3
A
293 299Right-handed alpha
Helix 4
AA4
A
340 351Right-handed alpha
Helix 5
AA5
A
362 366Right-handed 310
Helix 6
AA6
A
394 398Right-handed 310
Helix 7
AA7
B
121 123Right-handed 310
Helix 8
AA8
B
293 299Right-handed alpha
Helix 9
AA9
B
340 351Right-handed alpha
Helix 10
AB1
B
362 366Right-handed 310
Helix 11
AB2
B
394 398Right-handed 310
Helix 12
AB3
G
19 33Right-handed alpha
Helix 13
AB4
H
19 33Right-handed alpha
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There are 19 sheets in PDB entry 5GYY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
99 102anti-parallel
Strand 3
A
108 112anti-parallel
Strand 4
A
115 119anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
66 69anti-parallel
Strand 3
A
74 77anti-parallel
Strand 4
A
83 86anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
25 32anti-parallel
Strand 3
A
35 42anti-parallel
Strand 4
A
50 53anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
229 233anti-parallel
Strand 3
A
239 244anti-parallel
Strand 4
A
251 257anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 144first strand
Strand 2
A
134 137anti-parallel
Strand 3
A
215 222anti-parallel
Strand 4
A
205 211anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 149first strand
Strand 2
A
157 165anti-parallel
Strand 3
A
172 177anti-parallel
Strand 4
A
180 186anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 285first strand
Strand 2
A
273 275anti-parallel
Strand 3
A
379 381parallel
Strand 4
A
318 326anti-parallel
Strand 5
A
387 393anti-parallel
Strand 6
A
354 358anti-parallel
Strand 7
A
369 373anti-parallel
Strand 8
A
333 336anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
306 308anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
99 102anti-parallel
Strand 3
B
108 112anti-parallel
Strand 4
B
115 119anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
B
66 69anti-parallel
Strand 3
B
74 77anti-parallel
Strand 4
B
83 86anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 19first strand
Strand 2
B
25 32anti-parallel
Strand 3
B
35 42anti-parallel
Strand 4
B
50 53anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
229 233anti-parallel
Strand 3
B
239 244anti-parallel
Strand 4
B
251 257anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 144first strand
Strand 2
B
134 137anti-parallel
Strand 3
B
215 222anti-parallel
Strand 4
B
205 211anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 149first strand
Strand 2
B
157 165anti-parallel
Strand 3
B
172 177anti-parallel
Strand 4
B
180 187anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 275first strand
Strand 2
B
283 285anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 291first strand
Strand 2
B
306 308anti-parallel
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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 336first strand
Strand 2
B
369 373anti-parallel
Strand 3
B
354 358anti-parallel
Strand 4
B
387 393anti-parallel
Strand 5
B
318 326anti-parallel
Strand 6
B
380 381anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
6 13first strand
Strand 2
G
47 54anti-parallel
Strand 3
G
38 42anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 13first strand
Strand 2
H
47 54anti-parallel
Strand 3
H
38 42anti-parallel
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