Analysis of interatomic Contacts of Structural Units in PDB entry:
5GZ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GZ8 entry

There is 1 chain in PDB entry 5GZ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 54LEU 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5GZ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
72 79Right-handed alpha
Helix 2
AA2
A
111 113Right-handed 310
Helix 3
AA3
A
114 128Right-handed alpha
Helix 4
AA4
A
155 157Right-handed 310
Helix 5
AA5
A
158 163Right-handed alpha
Helix 6
AA6
A
173 193Right-handed alpha
Helix 7
AA7
A
206 213Right-handed alpha
Helix 8
AA8
A
254 258Right-handed 310
Helix 9
AA9
A
268 272Right-handed 310
Helix 10
AB1
A
277 293Right-handed alpha
Helix 11
AB2
A
297 313Right-handed alpha
Helix 12
AB3
A
316 320Right-handed 310
Helix 13
AB4
A
322 337Right-handed alpha
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There are 4 sheets in PDB entry 5GZ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
68 69anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 85first strand
Strand 2
A
93 99anti-parallel
Strand 3
A
102 108anti-parallel
Strand 4
A
145 149anti-parallel
Strand 5
A
136 140anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 199first strand
Strand 2
A
232 233anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
222 224anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il