Analysis of interatomic Contacts of Structural Units in PDB entry:
5GZK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GZK entry

There are 2 chains in PDB entry 5GZK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 23LEU 440
B
 ALA 23LEU 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5GZK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 40Right-handed alpha
Helix 2
AA2
A
72 88Right-handed alpha
Helix 3
AA3
A
92 110Right-handed alpha
Helix 4
AA4
A
140 158Right-handed alpha
Helix 5
AA5
A
161 178Right-handed alpha
Helix 6
AA6
A
179 185Right-handed 310
Helix 7
AA7
A
212 222Right-handed alpha
Helix 8
AA8
A
228 235Right-handed alpha
Helix 9
AA9
A
237 241Right-handed 310
Helix 10
AB1
A
266 275Right-handed 310
Helix 11
AB2
A
288 307Right-handed alpha
Helix 12
AB3
A
346 352Right-handed alpha
Helix 13
AB4
A
356 375Right-handed alpha
Helix 14
AB5
A
398 414Right-handed alpha
Helix 15
AB6
A
414 422Right-handed alpha
Helix 16
AB7
A
423 433Right-handed alpha
Helix 17
AB8
B
25 40Right-handed alpha
Helix 18
AB9
B
72 88Right-handed alpha
Helix 19
AC1
B
92 110Right-handed alpha
Helix 20
AC2
B
140 157Right-handed alpha
Helix 21
AC3
B
161 178Right-handed alpha
Helix 22
AC4
B
179 185Right-handed 310
Helix 23
AC5
B
212 222Right-handed alpha
Helix 24
AC6
B
229 235Right-handed alpha
Helix 25
AC7
B
237 241Right-handed 310
Helix 26
AC8
B
266 275Right-handed 310
Helix 27
AC9
B
288 307Right-handed alpha
Helix 28
AD1
B
345 352Right-handed alpha
Helix 29
AD2
B
356 375Right-handed alpha
Helix 30
AD3
B
398 414Right-handed alpha
Helix 31
AD4
B
414 422Right-handed alpha
Helix 32
AD5
B
423 433Right-handed alpha
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There are 12 sheets in PDB entry 5GZK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
395 397anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
A
120 122anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 139first strand
Strand 2
A
193 194anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 248first strand
Strand 2
A
251 255anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 326first strand
Strand 2
A
329 332anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 377first strand
Strand 2
A
380 381anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 57first strand
Strand 2
B
395 397anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 71first strand
Strand 2
B
120 122anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 139first strand
Strand 2
B
193 194anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 248first strand
Strand 2
B
251 255anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 326first strand
Strand 2
B
329 332anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
376 377first strand
Strand 2
B
380 381anti-parallel
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