Analysis of interatomic Contacts of Structural Units in PDB entry:
5GZL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GZL entry

There are 2 chains in PDB entry 5GZL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1PRO 347
A
 ARG -3PRO 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5GZL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
7 19Right-handed alpha
Helix 2
AA2
B
19 40Right-handed alpha
Helix 3
AA3
B
84 90Right-handed alpha
Helix 4
AA4
B
114 134Right-handed alpha
Helix 5
AA5
B
147 161Right-handed alpha
Helix 6
AA6
B
172 178Right-handed alpha
Helix 7
AA7
B
178 184Right-handed alpha
Helix 8
AA8
B
185 187Right-handed 310
Helix 9
AA9
B
194 202Right-handed alpha
Helix 10
AB1
B
244 249Right-handed alpha
Helix 11
AB2
B
257 265Right-handed alpha
Helix 12
AB3
B
266 270Right-handed 310
Helix 13
AB4
B
271 275Right-handed 310
Helix 14
AB5
B
278 285Right-handed alpha
Helix 15
AB6
B
286 291Right-handed alpha
Helix 16
AB7
B
304 322Right-handed alpha
Helix 17
AB8
A
7 19Right-handed alpha
Helix 18
AB9
A
19 40Right-handed alpha
Helix 19
AC1
A
84 90Right-handed alpha
Helix 20
AC2
A
114 134Right-handed alpha
Helix 21
AC3
A
147 159Right-handed alpha
Helix 22
AC4
A
172 178Right-handed alpha
Helix 23
AC5
A
178 184Right-handed alpha
Helix 24
AC6
A
185 187Right-handed 310
Helix 25
AC7
A
194 202Right-handed alpha
Helix 26
AC8
A
244 249Right-handed alpha
Helix 27
AC9
A
257 265Right-handed alpha
Helix 28
AD1
A
266 270Right-handed 310
Helix 29
AD2
A
271 275Right-handed 310
Helix 30
AD3
A
278 285Right-handed alpha
Helix 31
AD4
A
286 290Right-handed 310
Helix 32
AD5
A
304 322Right-handed alpha
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There are 4 sheets in PDB entry 5GZL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 54first strand
Strand 2
B
60 69anti-parallel
Strand 3
B
73 81anti-parallel
Strand 4
B
94 102anti-parallel
Strand 5
B
108 113anti-parallel
Strand 6
B
3 6parallel
Strand 7
B
326 328anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 192first strand
Strand 2
B
165 169parallel
Strand 3
B
140 144parallel
Strand 4
B
204 207parallel
Strand 5
B
229 232parallel
Strand 6
B
297 300parallel
Strand 7
B
252 255parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 54first strand
Strand 2
A
60 69anti-parallel
Strand 3
A
73 81anti-parallel
Strand 4
A
94 102anti-parallel
Strand 5
A
108 113anti-parallel
Strand 6
A
3 6parallel
Strand 7
A
326 328anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 192first strand
Strand 2
A
165 169parallel
Strand 3
A
140 144parallel
Strand 4
A
204 207parallel
Strand 5
A
229 232parallel
Strand 6
A
297 300parallel
Strand 7
A
252 255parallel
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