Analysis of interatomic Contacts of Structural Units in PDB entry:
5GZN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GZN entry

There are 5 chains in PDB entry 5GZN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 1	ILE 407
H	GLU 1	PRO 227
L	GLN 1	THR 213
B	ILE 1	ILE 407
C	GLU 1	THR 78

There are 41 helices in PDB entry 5GZN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	82	86	Right-handed 310
Helix 2	AA2	A	100	104	Right-handed 310
Helix 3	AA3	A	131	135	Right-handed 310
Helix 4	AA4	A	181	183	Right-handed 310
Helix 5	AA5	A	197	199	Right-handed 310
Helix 6	AA6	A	215	220	Right-handed alpha
Helix 7	AA7	A	238	241	Right-handed 310
Helix 8	AA8	A	261	269	Right-handed alpha
Helix 9	AA9	H	28	32	Right-handed 310
Helix 10	AB1	H	87	91	Right-handed 310
Helix 11	AB2	H	107	112	Right-handed alpha
Helix 12	AB3	H	201	203	Right-handed 310
Helix 13	AB4	L	80	84	Right-handed 310
Helix 14	AB5	L	125	130	Right-handed alpha
Helix 15	AB6	L	185	192	Right-handed alpha
Helix 16	AB7	B	82	86	Right-handed 310
Helix 17	AB8	B	100	104	Right-handed 310
Helix 18	AB9	B	181	183	Right-handed 310
Helix 19	AC1	B	197	199	Right-handed 310
Helix 20	AC2	B	215	220	Right-handed alpha
Helix 21	AC3	B	238	241	Right-handed 310
Helix 22	AC4	B	261	269	Right-handed alpha
Helix 23	AC5	C	28	32	Right-handed 310
Helix 24	AC6	C	62	65	Right-handed 310
Helix 25	AC7	C	87	91	Right-handed 310
Helix 26	AC8	C	107	112	Right-handed alpha
Helix 27	AC9	C	170	172	Right-handed 310
Helix 28	AD1	C	201	203	Right-handed 310
Helix 29	AD2	D	80	84	Right-handed 310
Helix 30	AD3	D	125	130	Right-handed alpha
Helix 31	AD4	D	185	192	Right-handed alpha
Helix 32	AD5	E	82	86	Right-handed 310
Helix 33	AD6	E	100	104	Right-handed 310
Helix 34	AD7	E	215	220	Right-handed alpha
Helix 35	AD8	E	238	241	Right-handed 310
Helix 36	AD9	E	261	269	Right-handed alpha
Helix 37	AE1	G	82	86	Right-handed 310
Helix 38	AE2	G	100	104	Right-handed 310
Helix 39	AE3	G	215	220	Right-handed alpha
Helix 40	AE4	G	238	241	Right-handed 310
Helix 41	AE5	G	261	269	Right-handed alpha

There are 47 sheets in PDB entry 5GZN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	30	34	parallel
Strand 3	A	41	45	anti-parallel
Strand 4	A	137	143	anti-parallel
Strand 5	A	164	169	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	24	first strand
Strand 2	A	290	294	anti-parallel
Strand 3	A	185	191	anti-parallel
Strand 4	A	175	179	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	51	first strand
Strand 2	A	281	284	anti-parallel
Strand 3	A	273	278	anti-parallel
Strand 4	A	209	214	anti-parallel
Strand 5	A	201	206	anti-parallel
Strand 6	A	109	129	anti-parallel
Strand 7	A	90	99	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	51	first strand
Strand 2	A	281	284	anti-parallel
Strand 3	A	273	278	anti-parallel
Strand 4	A	209	214	anti-parallel
Strand 5	A	201	206	anti-parallel
Strand 6	A	109	129	anti-parallel
Strand 7	A	54	73	anti-parallel
Strand 8	A	225	227	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	245	first strand
Strand 2	A	255	257	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	320	first strand
Strand 2	A	326	332	anti-parallel
Strand 3	A	372	379	anti-parallel
Strand 4	A	357	358	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	364	365	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	346	first strand
Strand 2	A	383	389	anti-parallel
Strand 3	A	396	402	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	17	24	anti-parallel
Strand 3	H	78	84	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	121	125	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	121	125	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	116	117	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	138	first strand
Strand 2	H	149	159	anti-parallel
Strand 3	H	190	199	anti-parallel
Strand 4	H	177	179	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	138	first strand
Strand 2	H	149	159	anti-parallel
Strand 3	H	190	199	anti-parallel
Strand 4	H	183	184	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	165	168	first strand
Strand 2	H	209	214	anti-parallel
Strand 3	H	219	224	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	105	109	parallel
Strand 3	L	85	93	anti-parallel
Strand 4	L	35	39	anti-parallel
Strand 5	L	46	49	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	105	109	parallel
Strand 3	L	85	93	anti-parallel
Strand 4	L	98	101	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	17	23	first strand
Strand 2	L	71	77	anti-parallel
Strand 3	L	63	68	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	118	122	first strand
Strand 2	L	134	143	anti-parallel
Strand 3	L	176	184	anti-parallel
Strand 4	L	163	165	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	118	122	first strand
Strand 2	L	134	143	anti-parallel
Strand 3	L	176	184	anti-parallel
Strand 4	L	169	170	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	158	159	first strand
Strand 2	L	149	153	anti-parallel
Strand 3	L	195	201	anti-parallel
Strand 4	L	204	210	anti-parallel

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There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	30	34	parallel
Strand 3	B	41	50	anti-parallel
Strand 4	B	281	284	anti-parallel
Strand 5	B	273	278	anti-parallel
Strand 6	B	210	214	anti-parallel
Strand 7	B	201	205	anti-parallel
Strand 8	B	123	129	anti-parallel
Strand 9	B	55	62	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	30	34	parallel
Strand 3	B	41	50	anti-parallel
Strand 4	B	136	143	anti-parallel
Strand 5	B	164	169	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	25	first strand
Strand 2	B	289	294	anti-parallel
Strand 3	B	185	191	anti-parallel
Strand 4	B	175	179	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	73	first strand
Strand 2	B	109	119	anti-parallel
Strand 3	B	90	99	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	248	first strand
Strand 2	B	253	257	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	320	first strand
Strand 2	B	326	332	anti-parallel
Strand 3	B	372	379	anti-parallel
Strand 4	B	357	358	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	364	365	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	355	first strand
Strand 2	B	343	346	anti-parallel
Strand 3	B	383	389	anti-parallel
Strand 4	B	396	402	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	17	24	anti-parallel
Strand 3	C	78	84	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	121	125	parallel
Strand 3	C	92	98	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	138	first strand
Strand 2	C	149	159	anti-parallel
Strand 3	C	190	199	anti-parallel
Strand 4	C	177	179	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	138	first strand
Strand 2	C	149	159	anti-parallel
Strand 3	C	190	199	anti-parallel
Strand 4	C	183	184	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	168	first strand
Strand 2	C	208	214	anti-parallel
Strand 3	C	219	225	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	105	109	parallel
Strand 3	D	85	93	anti-parallel
Strand 4	D	35	39	anti-parallel
Strand 5	D	46	49	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	105	109	parallel
Strand 3	D	85	93	anti-parallel
Strand 4	D	98	101	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	23	first strand
Strand 2	D	71	76	anti-parallel
Strand 3	D	63	68	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	122	first strand
Strand 2	D	134	143	anti-parallel
Strand 3	D	176	184	anti-parallel
Strand 4	D	163	165	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	122	first strand
Strand 2	D	134	143	anti-parallel
Strand 3	D	176	184	anti-parallel
Strand 4	D	169	170	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	159	first strand
Strand 2	D	149	153	anti-parallel
Strand 3	D	195	201	anti-parallel
Strand 4	D	204	210	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	135	136	first strand
Strand 2	E	49	50	anti-parallel
Strand 3	E	282	283	anti-parallel
Strand 4	E	276	277	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	99	first strand
Strand 2	E	109	128	anti-parallel
Strand 3	E	55	72	anti-parallel
Strand 4	E	225	227	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	201	205	first strand
Strand 2	E	210	214	anti-parallel
Strand 3	E	273	274	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	243	248	first strand
Strand 2	E	253	257	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	135	136	first strand
Strand 2	G	49	50	anti-parallel
Strand 3	G	282	283	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	99	first strand
Strand 2	G	109	129	anti-parallel
Strand 3	G	55	72	anti-parallel
Strand 4	G	225	227	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	99	first strand
Strand 2	G	109	129	anti-parallel
Strand 3	G	201	205	anti-parallel
Strand 4	G	210	214	anti-parallel
Strand 5	G	273	274	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	243	248	first strand
Strand 2	G	253	257	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GZN

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GZN