Analysis of interatomic Contacts of Structural Units in PDB entry:
5GZS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GZS entry

There is 1 chain in PDB entry 5GZS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 48TYR 491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5GZS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 74Right-handed alpha
Helix 2
AA2
A
84 95Right-handed alpha
Helix 3
AA3
A
108 112Right-handed 310
Helix 4
AA4
A
133 137Right-handed 310
Helix 5
AA5
A
147 156Right-handed alpha
Helix 6
AA6
A
165 175Right-handed alpha
Helix 7
AA7
A
188 195Right-handed alpha
Helix 8
AA8
A
220 232Right-handed alpha
Helix 9
AA9
A
233 264Right-handed alpha
Helix 10
AB1
A
292 305Right-handed alpha
Helix 11
AB2
A
321 328Right-handed alpha
Helix 12
AB3
A
373 378Right-handed 310
Helix 13
AB4
A
388 398Right-handed alpha
Helix 14
AB5
A
408 418Right-handed alpha
Helix 15
AB6
A
428 437Right-handed alpha
Helix 16
AB7
A
465 481Right-handed alpha
Helix 17
AB8
A
483 491Right-handed alpha
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There are 7 sheets in PDB entry 5GZS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
77 81parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 103first strand
Strand 2
A
211 215anti-parallel
Strand 3
A
114 120anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 185first strand
Strand 2
A
124 128anti-parallel
Strand 3
A
198 201anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 143first strand
Strand 2
A
160 164parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 311first strand
Strand 2
A
271 275parallel
Strand 3
A
333 337parallel
Strand 4
A
459 462anti-parallel
Strand 5
A
348 349anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 406first strand
Strand 2
A
382 385parallel
Strand 3
A
423 427parallel
Strand 4
A
357 363anti-parallel
Strand 5
A
444 446anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 406first strand
Strand 2
A
382 385parallel
Strand 3
A
423 427parallel
Strand 4
A
357 363anti-parallel
Strand 5
A
454 455anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il