Analysis of interatomic Contacts of Structural Units in PDB entry:
5GZU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GZU entry

There are 2 chains in PDB entry 5GZU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 559	ALA 1416
B	GLN 558	ALA 1416

There are 77 helices in PDB entry 5GZU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	579	583	Right-handed 310
Helix 2	AA2	A	600	603	Right-handed 310
Helix 3	AA3	A	604	609	Right-handed alpha
Helix 4	AA4	A	615	623	Right-handed alpha
Helix 5	AA5	A	625	636	Right-handed alpha
Helix 6	AA6	A	637	639	Right-handed 310
Helix 7	AA7	A	656	661	Right-handed alpha
Helix 8	AA8	A	663	681	Right-handed alpha
Helix 9	AA9	A	695	700	Right-handed alpha
Helix 10	AB1	A	706	730	Right-handed alpha
Helix 11	AB2	A	742	748	Right-handed alpha
Helix 12	AB3	A	750	755	Right-handed alpha
Helix 13	AB4	A	756	758	Right-handed 310
Helix 14	AB5	A	791	802	Right-handed alpha
Helix 15	AB6	A	805	807	Right-handed 310
Helix 16	AB7	A	846	853	Right-handed alpha
Helix 17	AB8	A	883	897	Right-handed alpha
Helix 18	AB9	A	906	910	Right-handed 310
Helix 19	AC1	A	914	925	Right-handed alpha
Helix 20	AC2	A	970	972	Right-handed 310
Helix 21	AC3	A	1022	1025	Right-handed 310
Helix 22	AC4	A	1057	1061	Right-handed 310
Helix 23	AC5	A	1091	1096	Right-handed alpha
Helix 24	AC6	A	1100	1109	Right-handed alpha
Helix 25	AC7	A	1111	1126	Right-handed alpha
Helix 26	AC8	A	1142	1148	Right-handed alpha
Helix 27	AC9	A	1149	1167	Right-handed alpha
Helix 28	AD1	A	1181	1186	Right-handed alpha
Helix 29	AD2	A	1192	1216	Right-handed alpha
Helix 30	AD3	A	1228	1235	Right-handed alpha
Helix 31	AD4	A	1236	1241	Right-handed alpha
Helix 32	AD5	A	1242	1244	Right-handed 310
Helix 33	AD6	A	1279	1290	Right-handed alpha
Helix 34	AD7	A	1293	1295	Right-handed 310
Helix 35	AD8	A	1314	1318	Right-handed 310
Helix 36	AD9	A	1324	1328	Right-handed 310
Helix 37	AE1	A	1333	1341	Right-handed alpha
Helix 38	AE2	A	1374	1389	Right-handed alpha
Helix 39	AE3	A	1397	1401	Right-handed 310
Helix 40	AE4	A	1404	1415	Right-handed alpha
Helix 41	AE5	B	579	583	Right-handed 310
Helix 42	AE6	B	604	609	Right-handed alpha
Helix 43	AE7	B	614	623	Right-handed alpha
Helix 44	AE8	B	625	636	Right-handed alpha
Helix 45	AE9	B	637	639	Right-handed 310
Helix 46	AF1	B	656	661	Right-handed alpha
Helix 47	AF2	B	663	681	Right-handed alpha
Helix 48	AF3	B	706	730	Right-handed alpha
Helix 49	AF4	B	742	748	Right-handed alpha
Helix 50	AF5	B	750	755	Right-handed alpha
Helix 51	AF6	B	756	758	Right-handed 310
Helix 52	AF7	B	791	801	Right-handed alpha
Helix 53	AF8	B	805	807	Right-handed 310
Helix 54	AF9	B	846	853	Right-handed alpha
Helix 55	AG1	B	883	897	Right-handed alpha
Helix 56	AG2	B	906	910	Right-handed 310
Helix 57	AG3	B	914	925	Right-handed alpha
Helix 58	AG4	B	970	972	Right-handed 310
Helix 59	AG5	B	1022	1025	Right-handed 310
Helix 60	AG6	B	1057	1061	Right-handed 310
Helix 61	AG7	B	1091	1096	Right-handed alpha
Helix 62	AG8	B	1100	1109	Right-handed alpha
Helix 63	AG9	B	1111	1126	Right-handed alpha
Helix 64	AH1	B	1142	1148	Right-handed alpha
Helix 65	AH2	B	1149	1168	Right-handed alpha
Helix 66	AH3	B	1181	1186	Right-handed alpha
Helix 67	AH4	B	1192	1216	Right-handed alpha
Helix 68	AH5	B	1228	1235	Right-handed alpha
Helix 69	AH6	B	1236	1241	Right-handed alpha
Helix 70	AH7	B	1242	1244	Right-handed 310
Helix 71	AH8	B	1279	1290	Right-handed alpha
Helix 72	AH9	B	1293	1295	Right-handed 310
Helix 73	AI1	B	1314	1318	Right-handed 310
Helix 74	AI2	B	1333	1341	Right-handed alpha
Helix 75	AI3	B	1374	1389	Right-handed alpha
Helix 76	AI4	B	1397	1401	Right-handed 310
Helix 77	AI5	B	1404	1415	Right-handed alpha

There are 15 sheets in PDB entry 5GZU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	597	599	first strand
Strand 2	A	585	594	anti-parallel
Strand 3	A	644	651	parallel
Strand 4	A	685	690	parallel
Strand 5	A	734	740	parallel
Strand 6	A	760	764	parallel
Strand 7	A	809	814	parallel
Strand 8	A	901	905	parallel
Strand 9	A	560	566	parallel
Strand 10	A	585	594	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	843	845	first strand
Strand 2	A	816	820	anti-parallel
Strand 3	A	878	880	anti-parallel
Strand 4	A	869	873	anti-parallel
Strand 5	A	860	864	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	932	933	first strand
Strand 2	A	1030	1031	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	935	936	first strand
Strand 2	A	954	962	anti-parallel
Strand 3	A	996	1001	anti-parallel
Strand 4	A	985	989	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	942	944	first strand
Strand 2	A	1036	1041	parallel
Strand 3	A	1014	1020	anti-parallel
Strand 4	A	974	977	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	950	951	first strand
Strand 2	A	1004	1005	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1084	1087	first strand
Strand 2	A	1072	1081	anti-parallel
Strand 3	A	1130	1136	parallel
Strand 4	A	1171	1175	parallel
Strand 5	A	1220	1225	parallel
Strand 6	A	1246	1249	parallel
Strand 7	A	1297	1302	parallel
Strand 8	A	1392	1396	parallel
Strand 9	A	1047	1053	parallel
Strand 10	A	1072	1081	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1306	1308	first strand
Strand 2	A	1368	1371	anti-parallel
Strand 3	A	1356	1361	anti-parallel
Strand 4	A	1347	1351	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	597	600	first strand
Strand 2	B	585	594	anti-parallel
Strand 3	B	644	651	parallel
Strand 4	B	685	690	parallel
Strand 5	B	734	740	parallel
Strand 6	B	760	764	parallel
Strand 7	B	809	814	parallel
Strand 8	B	901	905	parallel
Strand 9	B	560	566	parallel
Strand 10	B	585	594	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	843	845	first strand
Strand 2	B	816	820	anti-parallel
Strand 3	B	878	880	anti-parallel
Strand 4	B	869	873	anti-parallel
Strand 5	B	860	864	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	935	936	first strand
Strand 2	B	954	962	anti-parallel
Strand 3	B	996	1001	anti-parallel
Strand 4	B	985	989	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	942	944	first strand
Strand 2	B	1036	1041	parallel
Strand 3	B	1014	1020	anti-parallel
Strand 4	B	974	977	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	950	951	first strand
Strand 2	B	1004	1005	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1084	1087	first strand
Strand 2	B	1072	1081	anti-parallel
Strand 3	B	1130	1137	parallel
Strand 4	B	1171	1176	parallel
Strand 5	B	1220	1225	parallel
Strand 6	B	1246	1249	parallel
Strand 7	B	1297	1302	parallel
Strand 8	B	1392	1396	parallel
Strand 9	B	1047	1053	parallel
Strand 10	B	1072	1081	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1306	1308	first strand
Strand 2	B	1368	1371	anti-parallel
Strand 3	B	1356	1361	anti-parallel
Strand 4	B	1347	1351	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GZU

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GZU