Analysis of interatomic Contacts of Structural Units in PDB entry:
5GZV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GZV entry

There are 2 chains in PDB entry 5GZV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 557	ALA 1416
B	GLN 558	ALA 1416

There are 78 helices in PDB entry 5GZV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	604	609	Right-handed alpha
Helix 2	AA2	A	610	614	Right-handed 310
Helix 3	AA3	A	615	623	Right-handed alpha
Helix 4	AA4	A	625	635	Right-handed alpha
Helix 5	AA5	A	636	638	Right-handed 310
Helix 6	AA6	A	656	661	Right-handed alpha
Helix 7	AA7	A	663	681	Right-handed alpha
Helix 8	AA8	A	695	700	Right-handed alpha
Helix 9	AA9	A	706	730	Right-handed alpha
Helix 10	AB1	A	742	747	Right-handed alpha
Helix 11	AB2	A	750	755	Right-handed alpha
Helix 12	AB3	A	756	758	Right-handed 310
Helix 13	AB4	A	791	801	Right-handed alpha
Helix 14	AB5	A	805	807	Right-handed 310
Helix 15	AB6	A	846	853	Right-handed alpha
Helix 16	AB7	A	883	897	Right-handed alpha
Helix 17	AB8	A	906	910	Right-handed 310
Helix 18	AB9	A	914	925	Right-handed alpha
Helix 19	AC1	A	970	972	Right-handed 310
Helix 20	AC2	A	1022	1025	Right-handed 310
Helix 21	AC3	A	1091	1096	Right-handed alpha
Helix 22	AC4	A	1100	1109	Right-handed alpha
Helix 23	AC5	A	1111	1126	Right-handed alpha
Helix 24	AC6	A	1142	1148	Right-handed alpha
Helix 25	AC7	A	1149	1167	Right-handed alpha
Helix 26	AC8	A	1181	1186	Right-handed alpha
Helix 27	AC9	A	1192	1216	Right-handed alpha
Helix 28	AD1	A	1228	1235	Right-handed alpha
Helix 29	AD2	A	1236	1241	Right-handed alpha
Helix 30	AD3	A	1242	1244	Right-handed 310
Helix 31	AD4	A	1279	1290	Right-handed alpha
Helix 32	AD5	A	1293	1295	Right-handed 310
Helix 33	AD6	A	1314	1318	Right-handed 310
Helix 34	AD7	A	1333	1341	Right-handed alpha
Helix 35	AD8	A	1374	1389	Right-handed alpha
Helix 36	AD9	A	1397	1401	Right-handed 310
Helix 37	AE1	A	1404	1415	Right-handed alpha
Helix 38	AE2	B	570	574	Right-handed 310
Helix 39	AE3	B	579	583	Right-handed 310
Helix 40	AE4	B	600	603	Right-handed 310
Helix 41	AE5	B	604	609	Right-handed alpha
Helix 42	AE6	B	610	616	Right-handed 310
Helix 43	AE7	B	617	623	Right-handed alpha
Helix 44	AE8	B	625	635	Right-handed alpha
Helix 45	AE9	B	636	638	Right-handed 310
Helix 46	AF1	B	656	661	Right-handed alpha
Helix 47	AF2	B	663	682	Right-handed alpha
Helix 48	AF3	B	695	700	Right-handed alpha
Helix 49	AF4	B	706	722	Right-handed alpha
Helix 50	AF5	B	742	748	Right-handed alpha
Helix 51	AF6	B	750	755	Right-handed alpha
Helix 52	AF7	B	756	758	Right-handed 310
Helix 53	AF8	B	791	802	Right-handed alpha
Helix 54	AF9	B	805	807	Right-handed 310
Helix 55	AG1	B	846	853	Right-handed alpha
Helix 56	AG2	B	883	897	Right-handed alpha
Helix 57	AG3	B	906	910	Right-handed 310
Helix 58	AG4	B	914	925	Right-handed alpha
Helix 59	AG5	B	970	972	Right-handed 310
Helix 60	AG6	B	1022	1025	Right-handed 310
Helix 61	AG7	B	1057	1061	Right-handed 310
Helix 62	AG8	B	1091	1096	Right-handed alpha
Helix 63	AG9	B	1100	1109	Right-handed alpha
Helix 64	AH1	B	1111	1126	Right-handed alpha
Helix 65	AH2	B	1142	1148	Right-handed alpha
Helix 66	AH3	B	1149	1168	Right-handed alpha
Helix 67	AH4	B	1181	1186	Right-handed alpha
Helix 68	AH5	B	1192	1216	Right-handed alpha
Helix 69	AH6	B	1228	1235	Right-handed alpha
Helix 70	AH7	B	1236	1241	Right-handed alpha
Helix 71	AH8	B	1242	1244	Right-handed 310
Helix 72	AH9	B	1279	1290	Right-handed alpha
Helix 73	AI1	B	1293	1295	Right-handed 310
Helix 74	AI2	B	1314	1318	Right-handed 310
Helix 75	AI3	B	1333	1341	Right-handed alpha
Helix 76	AI4	B	1374	1389	Right-handed alpha
Helix 77	AI5	B	1397	1401	Right-handed 310
Helix 78	AI6	B	1404	1415	Right-handed alpha

There are 15 sheets in PDB entry 5GZV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	598	600	first strand
Strand 2	A	585	593	anti-parallel
Strand 3	A	644	651	parallel
Strand 4	A	685	690	parallel
Strand 5	A	734	739	parallel
Strand 6	A	760	763	parallel
Strand 7	A	809	814	parallel
Strand 8	A	901	905	parallel
Strand 9	A	560	566	parallel
Strand 10	A	585	593	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	843	845	first strand
Strand 2	A	816	820	anti-parallel
Strand 3	A	878	880	anti-parallel
Strand 4	A	869	873	anti-parallel
Strand 5	A	860	864	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	932	933	first strand
Strand 2	A	1030	1031	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	935	936	first strand
Strand 2	A	954	962	anti-parallel
Strand 3	A	996	1001	anti-parallel
Strand 4	A	985	989	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	942	944	first strand
Strand 2	A	1036	1041	parallel
Strand 3	A	1014	1020	anti-parallel
Strand 4	A	974	977	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	950	951	first strand
Strand 2	A	1004	1005	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1084	1087	first strand
Strand 2	A	1072	1081	anti-parallel
Strand 3	A	1130	1136	parallel
Strand 4	A	1171	1175	parallel
Strand 5	A	1220	1226	parallel
Strand 6	A	1246	1250	parallel
Strand 7	A	1297	1302	parallel
Strand 8	A	1392	1396	parallel
Strand 9	A	1047	1053	parallel
Strand 10	A	1072	1081	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1306	1308	first strand
Strand 2	A	1368	1371	anti-parallel
Strand 3	A	1356	1361	anti-parallel
Strand 4	A	1347	1351	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	560	566	first strand
Strand 2	B	585	591	parallel
Strand 3	B	647	650	parallel
Strand 4	B	685	689	parallel
Strand 5	B	734	739	parallel
Strand 6	B	761	763	parallel
Strand 7	B	809	814	parallel
Strand 8	B	901	905	parallel
Strand 9	B	560	566	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	843	845	first strand
Strand 2	B	816	820	anti-parallel
Strand 3	B	878	880	anti-parallel
Strand 4	B	869	873	anti-parallel
Strand 5	B	860	864	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	932	933	first strand
Strand 2	B	1030	1031	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	942	944	first strand
Strand 2	B	1036	1041	parallel
Strand 3	B	1014	1020	anti-parallel
Strand 4	B	974	977	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	954	959	first strand
Strand 2	B	996	1002	anti-parallel
Strand 3	B	984	986	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1084	1087	first strand
Strand 2	B	1072	1081	anti-parallel
Strand 3	B	1130	1136	parallel
Strand 4	B	1171	1175	parallel
Strand 5	B	1220	1225	parallel
Strand 6	B	1246	1249	parallel
Strand 7	B	1297	1302	parallel
Strand 8	B	1392	1396	parallel
Strand 9	B	1047	1053	parallel
Strand 10	B	1072	1081	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1306	1308	first strand
Strand 2	B	1368	1371	anti-parallel
Strand 3	B	1356	1361	anti-parallel
Strand 4	B	1347	1351	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GZV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GZV