Analysis of interatomic Contacts of Structural Units in PDB entry:
5GZW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GZW entry

There are 2 chains in PDB entry 5GZW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 4GLN 363
B
 ILE 8GLN 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5GZW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 24Right-handed alpha
Helix 2
AA2
A
65 80Right-handed alpha
Helix 3
AA3
A
88 93Right-handed 310
Helix 4
AA4
A
98 102Right-handed 310
Helix 5
AA5
A
105 111Right-handed alpha
Helix 6
AA6
A
127 138Right-handed alpha
Helix 7
AA7
A
151 163Right-handed alpha
Helix 8
AA8
A
164 167Right-handed 310
Helix 9
AA9
A
169 178Right-handed alpha
Helix 10
AB1
A
192 199Right-handed 310
Helix 11
AB2
A
216 221Right-handed alpha
Helix 12
AB3
A
226 239Right-handed alpha
Helix 13
AB4
A
240 243Right-handed 310
Helix 14
AB5
A
245 256Right-handed alpha
Helix 15
AB6
A
332 335Right-handed 310
Helix 16
AB7
A
347 363Right-handed alpha
Helix 17
AB8
B
9 24Right-handed alpha
Helix 18
AB9
B
65 80Right-handed alpha
Helix 19
AC1
B
88 92Right-handed 310
Helix 20
AC2
B
98 102Right-handed 310
Helix 21
AC3
B
105 111Right-handed alpha
Helix 22
AC4
B
127 138Right-handed alpha
Helix 23
AC5
B
151 163Right-handed alpha
Helix 24
AC6
B
169 178Right-handed alpha
Helix 25
AC7
B
192 199Right-handed 310
Helix 26
AC8
B
216 221Right-handed alpha
Helix 27
AC9
B
226 239Right-handed alpha
Helix 28
AD1
B
240 243Right-handed 310
Helix 29
AD2
B
245 256Right-handed alpha
Helix 30
AD3
B
279 286Right-handed alpha
Helix 31
AD4
B
332 335Right-handed 310
Helix 32
AD5
B
347 361Right-handed alpha
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There are 8 sheets in PDB entry 5GZW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
37 47anti-parallel
Strand 3
A
27 34anti-parallel
Strand 4
A
336 342anti-parallel
Strand 5
A
325 331anti-parallel
Strand 6
A
313 320anti-parallel
Strand 7
A
272 275anti-parallel
Strand 8
A
265 267anti-parallel
Strand 9
A
258 262anti-parallel
Strand 10
A
301 307anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
224 225anti-parallel
Strand 3
A
187 188anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
298 299anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 204first strand
Strand 2
A
207 209anti-parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
37 47anti-parallel
Strand 3
B
27 34anti-parallel
Strand 4
B
336 342anti-parallel
Strand 5
B
324 331anti-parallel
Strand 6
B
313 321anti-parallel
Strand 7
B
272 275anti-parallel
Strand 8
B
265 267anti-parallel
Strand 9
B
258 262anti-parallel
Strand 10
B
301 307anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
224 225anti-parallel
Strand 3
B
187 188anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
B
298 299anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 204first strand
Strand 2
B
207 209anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il