Analysis of interatomic Contacts of Structural Units in PDB entry:
5GZZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GZZ entry

There are 7 chains in PDB entry 5GZZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 7	PHE 575
B	MET 1	PRO 216
C	MET 1	PRO 216
D	MET 1	PRO 216
E	MET 1	PRO 216
F	MET 1	PRO 216
G	MET 1	PRO 216

There are 79 helices in PDB entry 5GZZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	23	Right-handed alpha
Helix 2	AA2	A	23	39	Right-handed alpha
Helix 3	AA3	A	42	48	Right-handed alpha
Helix 4	AA4	A	58	65	Right-handed alpha
Helix 5	AA5	A	69	82	Right-handed alpha
Helix 6	AA6	A	114	136	Right-handed alpha
Helix 7	AA7	A	164	171	Right-handed alpha
Helix 8	AA8	A	174	181	Right-handed alpha
Helix 9	AA9	A	189	194	Right-handed alpha
Helix 10	AB1	A	197	212	Right-handed alpha
Helix 11	AB2	A	224	248	Right-handed alpha
Helix 12	AB3	A	256	266	Right-handed alpha
Helix 13	AB4	A	270	284	Right-handed alpha
Helix 14	AB5	A	290	295	Right-handed alpha
Helix 15	AB6	A	306	310	Right-handed 310
Helix 16	AB7	A	312	321	Right-handed alpha
Helix 17	AB8	A	437	448	Right-handed alpha
Helix 18	AB9	A	449	454	Right-handed alpha
Helix 19	AC1	A	487	501	Right-handed alpha
Helix 20	AC2	A	503	512	Right-handed alpha
Helix 21	AC3	A	526	537	Right-handed alpha
Helix 22	AC4	A	556	562	Right-handed alpha
Helix 23	AC5	B	14	22	Right-handed alpha
Helix 24	AC6	B	34	36	Right-handed 310
Helix 25	AC7	B	37	45	Right-handed alpha
Helix 26	AC8	B	67	79	Right-handed alpha
Helix 27	AC9	B	85	111	Right-handed alpha
Helix 28	AD1	B	115	125	Right-handed alpha
Helix 29	AD2	B	125	135	Right-handed alpha
Helix 30	AD3	B	150	166	Right-handed alpha
Helix 31	AD4	B	173	184	Right-handed alpha
Helix 32	AD5	B	186	194	Right-handed alpha
Helix 33	AD6	C	11	13	Right-handed 310
Helix 34	AD7	C	14	24	Right-handed alpha
Helix 35	AD8	C	40	45	Right-handed alpha
Helix 36	AD9	C	67	79	Right-handed alpha
Helix 37	AE1	C	85	107	Right-handed alpha
Helix 38	AE2	C	114	123	Right-handed alpha
Helix 39	AE3	C	125	137	Right-handed alpha
Helix 40	AE4	C	150	166	Right-handed alpha
Helix 41	AE5	C	174	184	Right-handed alpha
Helix 42	AE6	C	186	195	Right-handed alpha
Helix 43	AE7	D	14	25	Right-handed alpha
Helix 44	AE8	D	37	42	Right-handed 310
Helix 45	AE9	D	67	79	Right-handed alpha
Helix 46	AF1	D	85	109	Right-handed alpha
Helix 47	AF2	D	114	138	Right-handed alpha
Helix 48	AF3	D	151	166	Right-handed alpha
Helix 49	AF4	D	173	186	Right-handed alpha
Helix 50	AF5	D	186	194	Right-handed alpha
Helix 51	AF6	E	16	24	Right-handed alpha
Helix 52	AF7	E	44	49	Right-handed 310
Helix 53	AF8	E	67	79	Right-handed alpha
Helix 54	AF9	E	85	109	Right-handed alpha
Helix 55	AG1	E	118	138	Right-handed alpha
Helix 56	AG2	E	149	164	Right-handed alpha
Helix 57	AG3	E	173	186	Right-handed alpha
Helix 58	AG4	E	186	192	Right-handed alpha
Helix 59	AG5	E	193	195	Right-handed 310
Helix 60	AG6	F	14	24	Right-handed alpha
Helix 61	AG7	F	34	38	Right-handed 310
Helix 62	AG8	F	39	45	Right-handed alpha
Helix 63	AG9	F	67	79	Right-handed alpha
Helix 64	AH1	F	85	109	Right-handed alpha
Helix 65	AH2	F	115	137	Right-handed alpha
Helix 66	AH3	F	149	166	Right-handed alpha
Helix 67	AH4	F	167	171	Right-handed 310
Helix 68	AH5	F	173	185	Right-handed alpha
Helix 69	AH6	F	186	193	Right-handed alpha
Helix 70	AH7	G	11	15	Right-handed 310
Helix 71	AH8	G	16	24	Right-handed alpha
Helix 72	AH9	G	37	45	Right-handed alpha
Helix 73	AI1	G	46	48	Right-handed 310
Helix 74	AI2	G	67	79	Right-handed alpha
Helix 75	AI3	G	85	108	Right-handed alpha
Helix 76	AI4	G	118	137	Right-handed alpha
Helix 77	AI5	G	149	166	Right-handed alpha
Helix 78	AI6	G	173	186	Right-handed alpha
Helix 79	AI7	G	186	195	Right-handed alpha

There are 12 sheets in PDB entry 5GZZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	99	first strand
Strand 2	A	110	113	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	146	first strand
Strand 2	A	218	223	parallel
Strand 3	A	300	304	parallel
Strand 4	A	325	327	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	161	162	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	339	first strand
Strand 2	A	352	354	anti-parallel
Strand 3	A	416	420	anti-parallel
Strand 4	A	401	413	anti-parallel
Strand 5	A	387	393	anti-parallel
Strand 6	A	360	365	anti-parallel
Strand 7	A	377	378	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	481	first strand
Strand 2	A	459	465	anti-parallel
Strand 3	A	550	551	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	519	521	first strand
Strand 2	A	569	571	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	33	first strand
Strand 2	B	4	8	parallel
Strand 3	B	57	59	anti-parallel
Strand 4	B	65	66	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	33	first strand
Strand 2	C	4	8	parallel
Strand 3	C	57	59	anti-parallel
Strand 4	C	64	66	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	33	first strand
Strand 2	D	4	8	parallel
Strand 3	D	57	59	anti-parallel
Strand 4	D	64	66	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	33	first strand
Strand 2	E	4	8	parallel
Strand 3	E	57	59	anti-parallel
Strand 4	E	64	66	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	6	first strand
Strand 2	F	57	59	anti-parallel
Strand 3	F	64	65	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	33	first strand
Strand 2	G	4	8	parallel
Strand 3	G	57	59	anti-parallel
Strand 4	G	64	65	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GZZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GZZ