Analysis of interatomic Contacts of Structural Units in PDB entry:
5H05

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5H05 entry

There are 4 chains in PDB entry 5H05 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	GLY 496
B	HIS 0	SER 493
C	HIS 0	ALA 494
D	HIS 0	GLY 496

There are 74 helices in PDB entry 5H05. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	11	Right-handed alpha
Helix 2	AA2	A	19	23	Right-handed 310
Helix 3	AA3	A	44	58	Right-handed alpha
Helix 4	AA4	A	78	88	Right-handed alpha
Helix 5	AA5	A	103	117	Right-handed alpha
Helix 6	AA6	A	155	171	Right-handed alpha
Helix 7	AA7	A	179	183	Right-handed 310
Helix 8	AA8	A	184	201	Right-handed alpha
Helix 9	AA9	A	225	233	Right-handed alpha
Helix 10	AB1	A	247	259	Right-handed alpha
Helix 11	AB2	A	269	279	Right-handed alpha
Helix 12	AB3	A	280	283	Right-handed 310
Helix 13	AB4	A	300	308	Right-handed alpha
Helix 14	AB5	A	315	331	Right-handed alpha
Helix 15	AB6	A	341	345	Right-handed 310
Helix 16	AB7	A	358	363	Right-handed alpha
Helix 17	AB8	A	384	404	Right-handed alpha
Helix 18	AB9	A	404	410	Right-handed alpha
Helix 19	AC1	B	3	11	Right-handed alpha
Helix 20	AC2	B	19	23	Right-handed 310
Helix 21	AC3	B	44	51	Right-handed alpha
Helix 22	AC4	B	51	58	Right-handed alpha
Helix 23	AC5	B	78	88	Right-handed alpha
Helix 24	AC6	B	103	117	Right-handed alpha
Helix 25	AC7	B	155	171	Right-handed alpha
Helix 26	AC8	B	179	183	Right-handed 310
Helix 27	AC9	B	184	200	Right-handed alpha
Helix 28	AD1	B	225	233	Right-handed alpha
Helix 29	AD2	B	247	259	Right-handed alpha
Helix 30	AD3	B	269	279	Right-handed alpha
Helix 31	AD4	B	280	283	Right-handed 310
Helix 32	AD5	B	300	308	Right-handed alpha
Helix 33	AD6	B	315	331	Right-handed alpha
Helix 34	AD7	B	341	345	Right-handed 310
Helix 35	AD8	B	358	363	Right-handed alpha
Helix 36	AD9	B	384	404	Right-handed alpha
Helix 37	AE1	B	404	410	Right-handed alpha
Helix 38	AE2	C	3	11	Right-handed alpha
Helix 39	AE3	C	19	23	Right-handed 310
Helix 40	AE4	C	44	58	Right-handed alpha
Helix 41	AE5	C	78	88	Right-handed alpha
Helix 42	AE6	C	103	117	Right-handed alpha
Helix 43	AE7	C	155	171	Right-handed alpha
Helix 44	AE8	C	179	183	Right-handed 310
Helix 45	AE9	C	184	200	Right-handed alpha
Helix 46	AF1	C	225	233	Right-handed alpha
Helix 47	AF2	C	247	259	Right-handed alpha
Helix 48	AF3	C	269	279	Right-handed alpha
Helix 49	AF4	C	280	283	Right-handed 310
Helix 50	AF5	C	300	308	Right-handed alpha
Helix 51	AF6	C	315	331	Right-handed alpha
Helix 52	AF7	C	341	345	Right-handed 310
Helix 53	AF8	C	359	363	Right-handed 310
Helix 54	AF9	C	384	404	Right-handed alpha
Helix 55	AG1	C	404	410	Right-handed alpha
Helix 56	AG2	C	451	454	Right-handed 310
Helix 57	AG3	D	3	11	Right-handed alpha
Helix 58	AG4	D	44	58	Right-handed alpha
Helix 59	AG5	D	78	88	Right-handed alpha
Helix 60	AG6	D	103	117	Right-handed alpha
Helix 61	AG7	D	155	171	Right-handed alpha
Helix 62	AG8	D	179	183	Right-handed 310
Helix 63	AG9	D	184	200	Right-handed alpha
Helix 64	AH1	D	225	233	Right-handed alpha
Helix 65	AH2	D	247	259	Right-handed alpha
Helix 66	AH3	D	269	279	Right-handed alpha
Helix 67	AH4	D	280	283	Right-handed 310
Helix 68	AH5	D	300	308	Right-handed alpha
Helix 69	AH6	D	315	331	Right-handed alpha
Helix 70	AH7	D	341	345	Right-handed 310
Helix 71	AH8	D	358	363	Right-handed alpha
Helix 72	AH9	D	384	404	Right-handed alpha
Helix 73	AI1	D	404	410	Right-handed alpha
Helix 74	AI2	D	451	453	Right-handed 310

There are 22 sheets in PDB entry 5H05. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	18	first strand
Strand 2	A	62	65	parallel
Strand 3	A	120	125	parallel
Strand 4	A	174	177	parallel
Strand 5	A	217	220	parallel
Strand 6	A	244	246	parallel
Strand 7	A	288	292	parallel
Strand 8	A	336	339	parallel
Strand 9	A	14	18	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	70	first strand
Strand 2	A	93	97	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	205	first strand
Strand 2	A	211	212	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	236	first strand
Strand 2	A	239	240	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	417	first strand
Strand 2	A	421	428	anti-parallel
Strand 3	A	431	438	anti-parallel
Strand 4	A	484	489	anti-parallel
Strand 5	A	459	461	anti-parallel
Strand 6	A	467	468	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	449	first strand
Strand 2	A	474	479	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	18	first strand
Strand 2	B	62	65	parallel
Strand 3	B	120	125	parallel
Strand 4	B	174	177	parallel
Strand 5	B	217	220	parallel
Strand 6	B	244	246	parallel
Strand 7	B	288	292	parallel
Strand 8	B	336	339	parallel
Strand 9	B	14	18	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	70	first strand
Strand 2	B	93	97	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	205	first strand
Strand 2	B	211	212	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	417	first strand
Strand 2	B	421	428	anti-parallel
Strand 3	B	431	438	anti-parallel
Strand 4	B	484	489	anti-parallel
Strand 5	B	458	461	anti-parallel
Strand 6	B	467	469	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	449	first strand
Strand 2	B	474	479	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	245	first strand
Strand 2	C	217	220	parallel
Strand 3	C	174	177	parallel
Strand 4	C	120	125	parallel
Strand 5	C	62	65	parallel
Strand 6	C	14	18	parallel
Strand 7	C	336	339	parallel
Strand 8	C	291	292	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	70	first strand
Strand 2	C	93	97	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	205	first strand
Strand 2	C	211	212	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	411	417	first strand
Strand 2	C	421	428	anti-parallel
Strand 3	C	431	438	anti-parallel
Strand 4	C	484	489	anti-parallel
Strand 5	C	459	461	anti-parallel
Strand 6	C	467	468	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	444	449	first strand
Strand 2	C	474	479	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	18	first strand
Strand 2	D	62	65	parallel
Strand 3	D	120	125	parallel
Strand 4	D	174	177	parallel
Strand 5	D	217	220	parallel
Strand 6	D	244	246	parallel
Strand 7	D	288	292	parallel
Strand 8	D	336	339	parallel
Strand 9	D	14	18	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	70	first strand
Strand 2	D	93	97	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	205	first strand
Strand 2	D	211	212	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	236	first strand
Strand 2	D	239	240	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	411	417	first strand
Strand 2	D	421	428	anti-parallel
Strand 3	D	431	438	anti-parallel
Strand 4	D	484	489	anti-parallel
Strand 5	D	459	461	anti-parallel
Strand 6	D	467	468	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	444	449	first strand
Strand 2	D	474	479	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5H05

Analysis of interatomic Contacts of Structural Units in PDB entry:
5H05