Analysis of interatomic Contacts of Structural Units in PDB entry:
5H07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H07 entry

There are 3 chains in PDB entry 5H07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 271
D
 SER 262SER 339
C
 ASP 274SER 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5H07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 35Right-handed alpha
Helix 2
AA2
A
37 39Right-handed 310
Helix 3
AA3
A
56 60Right-handed 310
Helix 4
AA4
A
122 135Right-handed alpha
Helix 5
AA5
A
137 139Right-handed 310
Helix 6
AA6
A
156 160Right-handed 310
Helix 7
AA7
A
222 234Right-handed alpha
Helix 8
AA8
D
263 274Right-handed alpha
Helix 9
AA9
D
275 337Right-handed alpha
Helix 10
AB1
C
275 339Right-handed alpha
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There are 3 sheets in PDB entry 5H07. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
2 7anti-parallel
Strand 3
A
66 71parallel
Strand 4
A
41 45anti-parallel
Strand 5
A
48 49anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 116first strand
Strand 2
A
102 106anti-parallel
Strand 3
A
166 171parallel
Strand 4
A
141 145anti-parallel
Strand 5
A
148 149anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 217first strand
Strand 2
A
201 206anti-parallel
Strand 3
A
266 270parallel
Strand 4
A
242 245anti-parallel
Strand 5
A
248 249anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il