Analysis of interatomic Contacts of Structural Units in PDB entry:
5H08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H08 entry

There is 1 chain in PDB entry 5H08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1696SER 1995
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5H08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1703 1715Right-handed alpha
Helix 2
AA2
A
1716 1734Right-handed alpha
Helix 3
AA3
A
1742 1747Right-handed alpha
Helix 4
AA4
A
1748 1751Right-handed 310
Helix 5
AA5
A
1804 1806Right-handed 310
Helix 6
AA6
A
1807 1818Right-handed alpha
Helix 7
AA7
A
1907 1922Right-handed alpha
Helix 8
AA8
A
1937 1957Right-handed alpha
Helix 9
AA9
A
1960 1969Right-handed alpha
Helix 10
AB1
A
1978 1994Right-handed alpha
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There are 2 sheets in PDB entry 5H08. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1699 1700first strand
Strand 2
A
1958 1959anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1785 1790first strand
Strand 2
A
1793 1800anti-parallel
Strand 3
A
1929 1932parallel
Strand 4
A
1822 1825parallel
Strand 5
A
1890 1896parallel
Strand 6
A
1865 1874anti-parallel
Strand 7
A
1852 1861anti-parallel
Strand 8
A
1846 1849anti-parallel
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