Analysis of interatomic Contacts of Structural Units in PDB entry:
5H0R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H0R entry

There are 4 chains in PDB entry 5H0R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
LEU 7ALA 1222
G
ALA 3VAL 560
H
A 12 A 53
I
U 1 U 42
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 5H0R. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
F
19 35Right-handed alpha
Helix 2
AA2
F
38 46Right-handed alpha
Helix 3
AA3
F
72 77Right-handed alpha
Helix 4
AA4
F
120 135Right-handed alpha
Helix 5
AA5
F
144 161Right-handed alpha
Helix 6
AA6
F
165 176Right-handed alpha
Helix 7
AA7
F
202 220Right-handed alpha
Helix 8
AA8
F
223 238Right-handed alpha
Helix 9
AA9
F
241 254Right-handed alpha
Helix 10
AB1
F
257 265Right-handed alpha
Helix 11
AB2
F
289 294Right-handed alpha
Helix 12
AB3
F
294 306Right-handed alpha
Helix 13
AB4
F
308 321Right-handed alpha
Helix 14
AB5
F
324 340Right-handed alpha
Helix 15
AB6
F
348 358Right-handed alpha
Helix 16
AB7
F
388 398Right-handed alpha
Helix 17
AB8
F
400 411Right-handed alpha
Helix 18
AB9
F
412 424Right-handed alpha
Helix 19
AC1
F
452 461Right-handed alpha
Helix 20
AC2
F
463 471Right-handed alpha
Helix 21
AC3
F
494 508Right-handed alpha
Helix 22
AC4
F
509 514Right-handed alpha
Helix 23
AC5
F
525 528Right-handed 310
Helix 24
AC6
F
529 538Right-handed alpha
Helix 25
AC7
F
549 552Right-handed 310
Helix 26
AC8
F
557 559Right-handed 310
Helix 27
AC9
F
560 572Right-handed alpha
Helix 28
AD1
F
603 615Right-handed alpha
Helix 29
AD2
F
641 666Right-handed alpha
Helix 30
AD3
F
689 707Right-handed alpha
Helix 31
AD4
F
752 767Right-handed alpha
Helix 32
AD5
F
775 788Right-handed alpha
Helix 33
AD6
F
801 812Right-handed alpha
Helix 34
AD7
F
833 839Right-handed 310
Helix 35
AD8
F
868 872Right-handed 310
Helix 36
AD9
F
873 879Right-handed alpha
Helix 37
AE1
F
880 888Right-handed alpha
Helix 38
AE2
F
893 900Right-handed alpha
Helix 39
AE3
F
901 911Right-handed alpha
Helix 40
AE4
F
918 923Right-handed alpha
Helix 41
AE5
F
932 938Right-handed alpha
Helix 42
AE6
F
942 959Right-handed alpha
Helix 43
AE7
F
995 1006Right-handed alpha
Helix 44
AE8
F
1014 1022Right-handed 310
Helix 45
AE9
F
1035 1040Right-handed alpha
Helix 46
AF1
F
1053 1062Right-handed alpha
Helix 47
AF2
F
1066 1081Right-handed alpha
Helix 48
AF3
F
1090 1103Right-handed alpha
Helix 49
AF4
F
1106 1114Right-handed alpha
Helix 50
AF5
F
1117 1135Right-handed alpha
Helix 51
AF6
F
1165 1172Right-handed alpha
Helix 52
AF7
F
1175 1189Right-handed alpha
Helix 53
AF8
F
1203 1212Right-handed alpha
Helix 54
AF9
F
1214 1219Right-handed alpha
Helix 55
AG1
G
9 16Right-handed alpha
Helix 56
AG2
G
44 63Right-handed alpha
Helix 57
AG3
G
69 78Right-handed alpha
Helix 58
AG4
G
135 147Right-handed alpha
Helix 59
AG5
G
162 167Right-handed alpha
Helix 60
AG6
G
169 176Right-handed alpha
Helix 61
AG7
G
177 179Right-handed 310
Helix 62
AG8
G
197 201Right-handed alpha
Helix 63
AG9
G
274 279Right-handed alpha
Helix 64
AH1
G
289 296Right-handed alpha
Helix 65
AH2
G
325 341Right-handed alpha
Helix 66
AH3
G
358 372Right-handed alpha
Helix 67
AH4
G
382 394Right-handed alpha
Helix 68
AH5
G
402 410Right-handed alpha
Helix 69
AH6
G
416 422Right-handed alpha
Helix 70
AH7
G
422 429Right-handed alpha
Helix 71
AH8
G
433 438Right-handed alpha
Helix 72
AH9
G
441 461Right-handed alpha
Helix 73
AI1
G
467 478Right-handed alpha
Helix 74
AI2
G
491 495Right-handed 310
Helix 75
AI3
G
512 517Right-handed alpha
Helix 76
AI4
G
519 523Right-handed 310
Helix 77
AI5
G
524 537Right-handed alpha
Helix 78
AI6
G
546 557Right-handed alpha
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There are 15 sheets in PDB entry 5H0R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
183 186first strand
Strand 2
F
191 194anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
266 272first strand
Strand 2
F
278 285anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
370 371first strand
Strand 2
F
383 384anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
487 490first strand
Strand 2
F
474 479anti-parallel
Strand 3
F
620 621parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
675 677first strand
Strand 2
F
681 686anti-parallel
Strand 3
F
542 547anti-parallel
Strand 4
F
715 716anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
578 579first strand
Strand 2
F
582 583anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
585 589first strand
Strand 2
F
598 602anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
727 728first strand
Strand 2
F
731 732anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
825 828first strand
Strand 2
F
794 797anti-parallel
Strand 3
F
993 994parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
813 814first strand
Strand 2
F
830 831anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
1026 1030first strand
Strand 2
F
1196 1199anti-parallel
Strand 3
F
1162 1163parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
19 20first strand
Strand 2
G
202 203anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
157 159first strand
Strand 2
G
182 184parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
256 258first strand
Strand 2
G
269 271anti-parallel
Strand 3
G
297 298anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
378 380first strand
Strand 2
G
484 489parallel
Strand 3
G
349 352parallel
Strand 4
G
504 507parallel
Strand 5
G
543 545parallel
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