Analysis of interatomic Contacts of Structural Units in PDB entry:
5H1B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H1B entry

There are 4 chains in PDB entry 5H1B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 22ASP 336
B
 PRO 22ASP 336
C
 PRO 22ASP 336
D
 T 1 T 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 5H1B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 28Right-handed 310
Helix 2
AA2
A
34 45Right-handed alpha
Helix 3
AA3
A
48 54Right-handed alpha
Helix 4
AA4
A
56 62Right-handed alpha
Helix 5
AA5
A
67 82Right-handed alpha
Helix 6
AA6
A
88 99Right-handed alpha
Helix 7
AA7
A
106 113Right-handed alpha
Helix 8
AA8
A
132 144Right-handed alpha
Helix 9
AA9
A
145 146Right-handed 310
Helix 10
AB1
A
147 151Right-handed 310
Helix 11
AB2
A
167 179Right-handed alpha
Helix 12
AB3
A
181 188Right-handed alpha
Helix 13
AB4
A
196 214Right-handed alpha
Helix 14
AB5
A
225 232Right-handed alpha
Helix 15
AB6
A
238 260Right-handed alpha
Helix 16
AB7
A
288 296Right-handed alpha
Helix 17
AB8
B
24 28Right-handed 310
Helix 18
AB9
B
34 45Right-handed alpha
Helix 19
AC1
B
48 54Right-handed alpha
Helix 20
AC2
B
56 62Right-handed alpha
Helix 21
AC3
B
67 82Right-handed alpha
Helix 22
AC4
B
89 99Right-handed alpha
Helix 23
AC5
B
106 113Right-handed alpha
Helix 24
AC6
B
132 144Right-handed alpha
Helix 25
AC7
B
145 146Right-handed 310
Helix 26
AC8
B
147 151Right-handed 310
Helix 27
AC9
B
167 179Right-handed alpha
Helix 28
AD1
B
181 188Right-handed alpha
Helix 29
AD2
B
196 214Right-handed alpha
Helix 30
AD3
B
225 232Right-handed alpha
Helix 31
AD4
B
238 260Right-handed alpha
Helix 32
AD5
B
288 296Right-handed alpha
Helix 33
AD6
C
24 28Right-handed 310
Helix 34
AD7
C
34 45Right-handed alpha
Helix 35
AD8
C
48 54Right-handed alpha
Helix 36
AD9
C
56 62Right-handed alpha
Helix 37
AE1
C
67 82Right-handed alpha
Helix 38
AE2
C
88 99Right-handed alpha
Helix 39
AE3
C
106 113Right-handed alpha
Helix 40
AE4
C
132 144Right-handed alpha
Helix 41
AE5
C
145 146Right-handed 310
Helix 42
AE6
C
147 151Right-handed 310
Helix 43
AE7
C
167 179Right-handed alpha
Helix 44
AE8
C
181 188Right-handed alpha
Helix 45
AE9
C
196 214Right-handed alpha
Helix 46
AF1
C
225 232Right-handed alpha
Helix 47
AF2
C
238 260Right-handed alpha
Helix 48
AF3
C
288 296Right-handed alpha
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There are 6 sheets in PDB entry 5H1B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 327first strand
Strand 2
A
310 315anti-parallel
Strand 3
A
299 304anti-parallel
Strand 4
A
122 127parallel
Strand 5
A
262 268parallel
Strand 6
A
216 221parallel
Strand 7
A
156 161parallel
Strand 8
A
190 193parallel
Strand 9
B
87 88anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
333 334anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 193first strand
Strand 2
B
156 161parallel
Strand 3
B
216 221parallel
Strand 4
B
262 268parallel
Strand 5
B
122 127parallel
Strand 6
B
299 304parallel
Strand 7
B
310 315anti-parallel
Strand 8
B
324 327anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 330first strand
Strand 2
B
333 334anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
190 193first strand
Strand 2
C
156 161parallel
Strand 3
C
216 221parallel
Strand 4
C
262 268parallel
Strand 5
C
122 127parallel
Strand 6
C
299 304parallel
Strand 7
C
310 315anti-parallel
Strand 8
C
324 327anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
329 330first strand
Strand 2
C
333 334anti-parallel
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