Analysis of interatomic Contacts of Structural Units in PDB entry:
5H1Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5H1Q entry

There are 8 chains in PDB entry 5H1Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 7	ILE 369
B	ALA 7	ILE 369
C	ALA 7	ILE 369
D	ALA 7	ILE 369
E	ALA 7	ILE 369
F	ALA 7	ILE 369
G	ALA 7	ILE 369
H	ALA 7	ILE 369

There are104 helices in PDB entry 5H1Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	20	Right-handed alpha
Helix 2	AA2	A	30	47	Right-handed alpha
Helix 3	AA3	A	68	79	Right-handed alpha
Helix 4	AA4	A	107	134	Right-handed alpha
Helix 5	AA5	A	136	151	Right-handed alpha
Helix 6	AA6	A	160	182	Right-handed alpha
Helix 7	AA7	A	187	213	Right-handed alpha
Helix 8	AA8	A	222	231	Right-handed alpha
Helix 9	AA9	A	269	305	Right-handed alpha
Helix 10	AB1	A	309	316	Right-handed alpha
Helix 11	AB2	A	327	335	Right-handed alpha
Helix 12	AB3	A	337	349	Right-handed alpha
Helix 13	AB4	A	351	365	Right-handed alpha
Helix 14	AB5	B	12	20	Right-handed alpha
Helix 15	AB6	B	30	47	Right-handed alpha
Helix 16	AB7	B	68	79	Right-handed alpha
Helix 17	AB8	B	107	134	Right-handed alpha
Helix 18	AB9	B	136	151	Right-handed alpha
Helix 19	AC1	B	160	182	Right-handed alpha
Helix 20	AC2	B	187	213	Right-handed alpha
Helix 21	AC3	B	222	231	Right-handed alpha
Helix 22	AC4	B	269	305	Right-handed alpha
Helix 23	AC5	B	309	316	Right-handed alpha
Helix 24	AC6	B	327	335	Right-handed alpha
Helix 25	AC7	B	337	349	Right-handed alpha
Helix 26	AC8	B	351	364	Right-handed alpha
Helix 27	AC9	C	12	20	Right-handed alpha
Helix 28	AD1	C	30	47	Right-handed alpha
Helix 29	AD2	C	68	79	Right-handed alpha
Helix 30	AD3	C	107	134	Right-handed alpha
Helix 31	AD4	C	136	151	Right-handed alpha
Helix 32	AD5	C	160	182	Right-handed alpha
Helix 33	AD6	C	187	213	Right-handed alpha
Helix 34	AD7	C	222	231	Right-handed alpha
Helix 35	AD8	C	269	305	Right-handed alpha
Helix 36	AD9	C	309	316	Right-handed alpha
Helix 37	AE1	C	327	335	Right-handed alpha
Helix 38	AE2	C	337	349	Right-handed alpha
Helix 39	AE3	C	351	364	Right-handed alpha
Helix 40	AE4	D	12	20	Right-handed alpha
Helix 41	AE5	D	30	47	Right-handed alpha
Helix 42	AE6	D	68	79	Right-handed alpha
Helix 43	AE7	D	107	134	Right-handed alpha
Helix 44	AE8	D	136	151	Right-handed alpha
Helix 45	AE9	D	160	182	Right-handed alpha
Helix 46	AF1	D	187	213	Right-handed alpha
Helix 47	AF2	D	222	231	Right-handed alpha
Helix 48	AF3	D	269	305	Right-handed alpha
Helix 49	AF4	D	309	316	Right-handed alpha
Helix 50	AF5	D	327	335	Right-handed alpha
Helix 51	AF6	D	337	349	Right-handed alpha
Helix 52	AF7	D	351	364	Right-handed alpha
Helix 53	AF8	E	12	20	Right-handed alpha
Helix 54	AF9	E	30	47	Right-handed alpha
Helix 55	AG1	E	68	79	Right-handed alpha
Helix 56	AG2	E	107	134	Right-handed alpha
Helix 57	AG3	E	136	151	Right-handed alpha
Helix 58	AG4	E	160	182	Right-handed alpha
Helix 59	AG5	E	187	213	Right-handed alpha
Helix 60	AG6	E	222	231	Right-handed alpha
Helix 61	AG7	E	269	305	Right-handed alpha
Helix 62	AG8	E	309	316	Right-handed alpha
Helix 63	AG9	E	327	335	Right-handed alpha
Helix 64	AH1	E	337	349	Right-handed alpha
Helix 65	AH2	E	351	364	Right-handed alpha
Helix 66	AH3	F	12	20	Right-handed alpha
Helix 67	AH4	F	30	47	Right-handed alpha
Helix 68	AH5	F	68	79	Right-handed alpha
Helix 69	AH6	F	107	134	Right-handed alpha
Helix 70	AH7	F	136	151	Right-handed alpha
Helix 71	AH8	F	160	182	Right-handed alpha
Helix 72	AH9	F	187	213	Right-handed alpha
Helix 73	AI1	F	222	231	Right-handed alpha
Helix 74	AI2	F	269	305	Right-handed alpha
Helix 75	AI3	F	309	316	Right-handed alpha
Helix 76	AI4	F	327	335	Right-handed alpha
Helix 77	AI5	F	337	349	Right-handed alpha
Helix 78	AI6	F	351	364	Right-handed alpha
Helix 79	AI7	G	12	20	Right-handed alpha
Helix 80	AI8	G	30	47	Right-handed alpha
Helix 81	AI9	G	68	79	Right-handed alpha
Helix 82	AJ1	G	107	134	Right-handed alpha
Helix 83	AJ2	G	136	151	Right-handed alpha
Helix 84	AJ3	G	160	182	Right-handed alpha
Helix 85	AJ4	G	187	213	Right-handed alpha
Helix 86	AJ5	G	222	231	Right-handed alpha
Helix 87	AJ6	G	269	305	Right-handed alpha
Helix 88	AJ7	G	309	316	Right-handed alpha
Helix 89	AJ8	G	327	335	Right-handed alpha
Helix 90	AJ9	G	337	349	Right-handed alpha
Helix 91	AK1	G	351	365	Right-handed alpha
Helix 92	AK2	H	12	20	Right-handed alpha
Helix 93	AK3	H	30	47	Right-handed alpha
Helix 94	AK4	H	68	79	Right-handed alpha
Helix 95	AK5	H	107	134	Right-handed alpha
Helix 96	AK6	H	136	151	Right-handed alpha
Helix 97	AK7	H	160	182	Right-handed alpha
Helix 98	AK8	H	187	213	Right-handed alpha
Helix 99	AK9	H	222	231	Right-handed alpha
Helix 100	AL1	H	269	305	Right-handed alpha
Helix 101	AL2	H	309	316	Right-handed alpha
Helix 102	AL3	H	327	335	Right-handed alpha
Helix 103	AL4	H	337	349	Right-handed alpha
Helix 104	AL5	H	351	364	Right-handed alpha

There are 16 sheets in PDB entry 5H1Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	58	first strand
Strand 2	A	265	267	anti-parallel
Strand 3	A	245	246	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	251	first strand
Strand 2	A	260	262	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	58	first strand
Strand 2	B	265	267	anti-parallel
Strand 3	B	245	246	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	251	first strand
Strand 2	B	260	262	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	58	first strand
Strand 2	C	265	267	anti-parallel
Strand 3	C	245	246	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	251	first strand
Strand 2	C	260	262	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	58	first strand
Strand 2	D	265	267	anti-parallel
Strand 3	D	245	246	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	251	first strand
Strand 2	D	260	262	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	58	first strand
Strand 2	E	265	267	anti-parallel
Strand 3	E	245	246	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	249	251	first strand
Strand 2	E	260	262	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	58	first strand
Strand 2	F	265	267	anti-parallel
Strand 3	F	245	246	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	249	251	first strand
Strand 2	F	260	262	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	58	first strand
Strand 2	G	265	267	anti-parallel
Strand 3	G	245	246	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	249	251	first strand
Strand 2	G	260	262	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	58	first strand
Strand 2	H	265	267	anti-parallel
Strand 3	H	245	246	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	249	251	first strand
Strand 2	H	260	262	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5H1Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
5H1Q