Analysis of interatomic Contacts of Structural Units in PDB entry:
5H1S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5H1S entry

There are 32 chains in PDB entry 5H1S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	U 1	A 2810
C	A 5	C 106
B	U 3	G 119
L	TRP 100	ILE 246
M	MET 1	LEU 121
N	PHE 80	TYR 256
O	LEU 2	GLY 135
P	MET 11	VAL 126
Q	HIS 47	PHE 166
R	GLN 115	PHE 232
S	ARG 3	LYS 117
T	VAL 88	THR 234
U	PRO 26	ARG 169
V	LEU 102	ILE 193
W	ARG 50	ARG 173
X	THR 66	LYS 165
Y	ARG 72	LEU 145
Z	ASP 63	LEU 152
E	ASN 23	ARG 269
b	ALA 2	PHE 47
c	VAL 9	THR 59
d	ALA 91	ALA 147
e	GLY 89	ARG 157
f	MET 38	GLY 74
F	VAL 86	ILE 297
G	LEU 52	VAL 261
H	ARG 56	PHE 230
I	ARG 42	GLY 214
J	LYS 43	MET 95
g	LYS 79	ALA 121
a	LYS 38	GLY 75
h	SER 48	SER 93

There are 82 helices in PDB entry 5H1S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	123	132	Right-handed alpha
Helix 2	AA2	L	166	171	Right-handed alpha
Helix 3	AA3	L	187	195	Right-handed alpha
Helix 4	AA4	L	197	208	Right-handed alpha
Helix 5	AA5	L	211	218	Right-handed alpha
Helix 6	AA6	M	104	109	Right-handed 310
Helix 7	AA7	M	110	116	Right-handed alpha
Helix 8	AA8	N	115	120	Right-handed alpha
Helix 9	AA9	N	135	140	Right-handed alpha
Helix 10	AB1	N	160	166	Right-handed alpha
Helix 11	AB2	N	176	185	Right-handed alpha
Helix 12	AB3	N	218	229	Right-handed alpha
Helix 13	AB4	N	243	254	Right-handed alpha
Helix 14	AB5	O	44	59	Right-handed alpha
Helix 15	AB6	O	110	124	Right-handed alpha
Helix 16	AB7	P	23	42	Right-handed alpha
Helix 17	AB8	P	48	66	Right-handed alpha
Helix 18	AB9	P	69	80	Right-handed alpha
Helix 19	AC1	P	82	91	Right-handed alpha
Helix 20	AC2	P	92	97	Right-handed alpha
Helix 21	AC3	Q	49	65	Right-handed alpha
Helix 22	AC4	Q	116	132	Right-handed alpha
Helix 23	AC5	Q	150	162	Right-handed alpha
Helix 24	AC6	R	122	138	Right-handed alpha
Helix 25	AC7	R	175	178	Right-handed 310
Helix 26	AC8	R	226	230	Right-handed 310
Helix 27	AC9	S	8	21	Right-handed alpha
Helix 28	AD1	S	31	71	Right-handed alpha
Helix 29	AD2	S	79	88	Right-handed alpha
Helix 30	AD3	S	96	104	Right-handed alpha
Helix 31	AD4	S	104	117	Right-handed alpha
Helix 32	AD5	T	104	111	Right-handed alpha
Helix 33	AD6	U	42	53	Right-handed alpha
Helix 34	AD7	U	57	68	Right-handed alpha
Helix 35	AD8	U	72	85	Right-handed alpha
Helix 36	AD9	U	86	88	Right-handed 310
Helix 37	AE1	U	153	161	Right-handed alpha
Helix 38	AE2	V	111	113	Right-handed 310
Helix 39	AE3	V	121	132	Right-handed alpha
Helix 40	AE4	V	144	149	Right-handed alpha
Helix 41	AE5	V	183	192	Right-handed alpha
Helix 42	AE6	W	50	54	Right-handed 310
Helix 43	AE7	X	148	165	Right-handed alpha
Helix 44	AE8	Y	111	114	Right-handed 310
Helix 45	AE9	Y	122	133	Right-handed alpha
Helix 46	AF1	Y	134	142	Right-handed alpha
Helix 47	AF2	Z	72	96	Right-handed alpha
Helix 48	AF3	Z	100	105	Right-handed alpha
Helix 49	AF4	Z	105	127	Right-handed alpha
Helix 50	AF5	Z	129	142	Right-handed alpha
Helix 51	AF6	E	193	199	Right-handed 310
Helix 52	AF7	E	205	211	Right-handed alpha
Helix 53	AF8	b	9	39	Right-handed alpha
Helix 54	AF9	d	101	110	Right-handed alpha
Helix 55	AG1	d	110	117	Right-handed alpha
Helix 56	AG2	d	117	131	Right-handed alpha
Helix 57	AG3	e	95	99	Right-handed 310
Helix 58	AG4	e	125	132	Right-handed alpha
Helix 59	AG5	e	141	146	Right-handed alpha
Helix 60	AG6	f	66	70	Right-handed 310
Helix 61	AG7	F	150	160	Right-handed alpha
Helix 62	AG8	F	210	215	Right-handed alpha
Helix 63	AG9	G	79	95	Right-handed alpha
Helix 64	AH1	G	153	169	Right-handed alpha
Helix 65	AH2	G	188	198	Right-handed alpha
Helix 66	AH3	G	213	218	Right-handed alpha
Helix 67	AH4	G	248	259	Right-handed alpha
Helix 68	AH5	H	57	64	Right-handed alpha
Helix 69	AH6	H	65	74	Right-handed alpha
Helix 70	AH7	H	77	81	Right-handed 310
Helix 71	AH8	H	99	114	Right-handed alpha
Helix 72	AH9	H	147	160	Right-handed alpha
Helix 73	AI1	H	195	199	Right-handed 310
Helix 74	AI2	H	217	225	Right-handed alpha
Helix 75	AI3	I	99	122	Right-handed alpha
Helix 76	AI4	I	177	190	Right-handed alpha
Helix 77	AI5	J	70	75	Right-handed alpha
Helix 78	AI6	J	88	93	Right-handed alpha
Helix 79	AI7	g	80	84	Right-handed 310
Helix 80	AI8	g	89	121	Right-handed alpha
Helix 81	AI9	h	56	62	Right-handed alpha
Helix 82	AJ1	h	68	74	Right-handed alpha

There are 39 sheets in PDB entry 5H1S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	118	first strand
Strand 2	L	153	156	parallel
Strand 3	L	221	223	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	175	176	first strand
Strand 2	L	183	184	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	91	93	first strand
Strand 2	M	83	88	anti-parallel
Strand 3	M	57	64	anti-parallel
Strand 4	M	38	46	anti-parallel
Strand 5	M	16	25	anti-parallel
Strand 6	M	7	10	anti-parallel
Strand 7	M	83	88	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	102	106	first strand
Strand 2	O	32	36	anti-parallel
Strand 3	O	129	133	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	40	43	first strand
Strand 2	O	94	97	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	44	47	first strand
Strand 2	P	120	125	anti-parallel
Strand 3	P	105	106	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	44	47	first strand
Strand 2	P	120	125	anti-parallel
Strand 3	P	109	110	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	93	99	first strand
Strand 2	Q	81	88	anti-parallel
Strand 3	Q	72	78	anti-parallel
Strand 4	Q	140	142	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	192	197	first strand
Strand 2	R	180	185	anti-parallel
Strand 3	R	162	173	anti-parallel
Strand 4	R	147	154	anti-parallel
Strand 5	R	203	211	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	132	136	first strand
Strand 2	T	123	129	anti-parallel
Strand 3	T	161	166	anti-parallel
Strand 4	T	170	171	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	141	144	first strand
Strand 2	T	217	224	anti-parallel
Strand 3	T	182	185	anti-parallel
Strand 4	T	156	157	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	197	199	first strand
Strand 2	T	208	210	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	32	35	first strand
Strand 2	U	132	138	anti-parallel
Strand 3	U	98	100	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	32	35	first strand
Strand 2	U	132	138	anti-parallel
Strand 3	U	104	105	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	111	117	first strand
Strand 2	U	121	127	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	115	118	first strand
Strand 2	V	133	138	anti-parallel
Strand 3	V	172	178	anti-parallel
Strand 4	V	159	166	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	129	130	first strand
Strand 2	W	98	101	anti-parallel
Strand 3	W	86	93	anti-parallel
Strand 4	W	74	77	anti-parallel
Strand 5	W	134	136	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	107	108	first strand
Strand 2	W	124	125	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	150	151	first strand
Strand 2	W	157	158	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	92	94	first strand
Strand 2	X	115	117	anti-parallel
Strand 3	X	107	109	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	122	124	first strand
Strand 2	X	136	138	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	83	84	first strand
Strand 2	Y	98	99	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	104	110	first strand
Strand 2	Y	115	121	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	87	91	anti-parallel
Strand 3	E	97	101	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	140	first strand
Strand 2	E	186	188	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	164	first strand
Strand 2	E	167	172	anti-parallel
Strand 3	E	176	180	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	13	15	first strand
Strand 2	c	32	34	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	103	104	first strand
Strand 2	e	110	111	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	52	56	first strand
Strand 2	f	59	63	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	258	264	first strand
Strand 2	F	197	202	anti-parallel
Strand 3	F	289	294	anti-parallel
Strand 4	F	92	103	anti-parallel
Strand 5	F	109	116	anti-parallel
Strand 6	F	275	279	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	122	127	first strand
Strand 2	F	136	141	anti-parallel
Strand 3	F	167	172	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	208	209	first strand
Strand 2	F	252	253	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	119	120	first strand
Strand 2	H	140	142	anti-parallel
Strand 3	H	87	90	anti-parallel
Strand 4	H	206	209	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	55	59	first strand
Strand 2	I	62	66	anti-parallel
Strand 3	I	73	74	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	80	84	first strand
Strand 2	I	90	94	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	123	126	first strand
Strand 2	I	172	175	anti-parallel
Strand 3	I	161	164	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	135	139	first strand
Strand 2	I	142	146	anti-parallel
Strand 3	I	153	156	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	51	52	first strand
Strand 2	J	85	86	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	50	51	first strand
Strand 2	a	69	70	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5H1S

Analysis of interatomic Contacts of Structural Units in PDB entry:
5H1S