Analysis of interatomic Contacts of Structural Units in PDB entry:
5H1U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H1U entry

There are 4 chains in PDB entry 5H1U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 827PRO 1006
A
 ASP 827PRO 1006
C
 PRO 824PRO 1006
D
 GLU 826PRO 1006
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5H1U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
880 884Right-handed 310
Helix 2
AA2
B
901 918Right-handed alpha
Helix 3
AA3
B
921 925Right-handed 310
Helix 4
AA4
B
934 939Right-handed alpha
Helix 5
AA5
B
944 954Right-handed alpha
Helix 6
AA6
B
961 980Right-handed alpha
Helix 7
AA7
B
984 1005Right-handed alpha
Helix 8
AA8
A
880 884Right-handed 310
Helix 9
AA9
A
901 918Right-handed alpha
Helix 10
AB1
A
921 926Right-handed alpha
Helix 11
AB2
A
934 939Right-handed alpha
Helix 12
AB3
A
944 954Right-handed alpha
Helix 13
AB4
A
961 980Right-handed alpha
Helix 14
AB5
A
984 1005Right-handed alpha
Helix 15
AB6
C
880 884Right-handed 310
Helix 16
AB7
C
901 918Right-handed alpha
Helix 17
AB8
C
919 925Right-handed 310
Helix 18
AB9
C
934 939Right-handed alpha
Helix 19
AC1
C
944 954Right-handed alpha
Helix 20
AC2
C
961 980Right-handed alpha
Helix 21
AC3
C
984 1005Right-handed alpha
Helix 22
AC4
D
880 884Right-handed 310
Helix 23
AC5
D
901 918Right-handed alpha
Helix 24
AC6
D
919 925Right-handed 310
Helix 25
AC7
D
934 939Right-handed alpha
Helix 26
AC8
D
944 954Right-handed alpha
Helix 27
AC9
D
961 980Right-handed alpha
Helix 28
AD1
D
984 1005Right-handed alpha
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There are 4 sheets in PDB entry 5H1U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
839 840first strand
Strand 2
B
847 848anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
839 840first strand
Strand 2
A
847 848anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
839 840first strand
Strand 2
C
847 848anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
839 840first strand
Strand 2
D
847 848anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il