Analysis of interatomic Contacts of Structural Units in PDB entry:
5H2V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H2V entry

There are 2 chains in PDB entry 5H2V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3PHE 1088
B
 GLY 51LYS 55
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 5H2V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 19Right-handed alpha
Helix 2
AA2
A
25 38Right-handed alpha
Helix 3
AA3
A
43 58Right-handed alpha
Helix 4
AA4
A
60 78Right-handed alpha
Helix 5
AA5
A
79 94Right-handed 310
Helix 6
AA6
A
95 111Right-handed alpha
Helix 7
AA7
A
115 128Right-handed alpha
Helix 8
AA8
A
137 149Right-handed alpha
Helix 9
AA9
A
152 166Right-handed alpha
Helix 10
AB1
A
168 173Right-handed alpha
Helix 11
AB2
A
174 187Right-handed alpha
Helix 12
AB3
A
190 208Right-handed alpha
Helix 13
AB4
A
209 218Right-handed 310
Helix 14
AB5
A
219 233Right-handed alpha
Helix 15
AB6
A
235 253Right-handed alpha
Helix 16
AB7
A
254 258Right-handed 310
Helix 17
AB8
A
260 274Right-handed alpha
Helix 18
AB9
A
278 296Right-handed alpha
Helix 19
AC1
A
296 302Right-handed alpha
Helix 20
AC2
A
303 319Right-handed alpha
Helix 21
AC3
A
328 334Right-handed alpha
Helix 22
AC4
A
342 360Right-handed alpha
Helix 23
AC5
A
360 376Right-handed alpha
Helix 24
AC6
A
380 395Right-handed alpha
Helix 25
AC7
A
398 403Right-handed alpha
Helix 26
AC8
A
405 414Right-handed alpha
Helix 27
AC9
A
415 419Right-handed 310
Helix 28
AD1
A
421 439Right-handed alpha
Helix 29
AD2
A
441 458Right-handed alpha
Helix 30
AD3
A
464 480Right-handed alpha
Helix 31
AD4
A
483 488Right-handed alpha
Helix 32
AD5
A
490 502Right-handed alpha
Helix 33
AD6
A
506 525Right-handed alpha
Helix 34
AD7
A
526 530Right-handed 310
Helix 35
AD8
A
531 544Right-handed alpha
Helix 36
AD9
A
551 569Right-handed alpha
Helix 37
AE1
A
569 574Right-handed alpha
Helix 38
AE2
A
576 589Right-handed alpha
Helix 39
AE3
A
597 614Right-handed alpha
Helix 40
AE4
A
615 619Right-handed 310
Helix 41
AE5
A
620 633Right-handed alpha
Helix 42
AE6
A
644 651Right-handed alpha
Helix 43
AE7
A
669 690Right-handed alpha
Helix 44
AE8
A
693 704Right-handed alpha
Helix 45
AE9
A
704 709Right-handed alpha
Helix 46
AF1
A
714 735Right-handed alpha
Helix 47
AF2
A
741 758Right-handed alpha
Helix 48
AF3
A
763 782Right-handed alpha
Helix 49
AF4
A
787 810Right-handed alpha
Helix 50
AF5
A
829 849Right-handed alpha
Helix 51
AF6
A
852 858Right-handed alpha
Helix 52
AF7
A
860 870Right-handed alpha
Helix 53
AF8
A
872 891Right-handed alpha
Helix 54
AF9
A
897 910Right-handed alpha
Helix 55
AG1
A
913 931Right-handed alpha
Helix 56
AG2
A
935 940Right-handed alpha
Helix 57
AG3
A
942 950Right-handed alpha
Helix 58
AG4
A
960 978Right-handed alpha
Helix 59
AG5
A
987 994Right-handed alpha
Helix 60
AG6
A
1001 1017Right-handed alpha
Helix 61
AG7
A
1028 1042Right-handed alpha
Helix 62
AG8
A
1050 1063Right-handed alpha
Helix 63
AG9
A
1070 1074Right-handed 310
Helix 64
AH1
A
1077 1086Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5H2V.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
638 641first strand
Strand 2
A
664 668anti-parallel
Strand 3
A
655 658anti-parallel
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