Analysis of interatomic Contacts of Structural Units in PDB entry:
5H34


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H34 entry

There are 2 chains in PDB entry 5H34 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 666ARG 776
B
 ALA 665ARG 776
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5H34. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
673 679Right-handed alpha
Helix 2
AA2
A
722 727Right-handed alpha
Helix 3
AA3
B
673 679Right-handed alpha
Helix 4
AA4
B
722 727Right-handed alpha
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There are 5 sheets in PDB entry 5H34. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
710 715first strand
Strand 2
A
700 705anti-parallel
Strand 3
A
682 692anti-parallel
Strand 4
A
730 734anti-parallel
Strand 5
A
750 751anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
740 742first strand
Strand 2
A
745 747anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
774 776first strand
Strand 2
B
753 755anti-parallel
Strand 3
B
760 765anti-parallel
Strand 4
A
760 765anti-parallel
Strand 5
A
753 755anti-parallel
Strand 6
B
774 776anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
710 715first strand
Strand 2
B
700 705anti-parallel
Strand 3
B
682 692anti-parallel
Strand 4
B
730 734anti-parallel
Strand 5
B
750 751anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
740 742first strand
Strand 2
B
745 747anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il