Analysis of interatomic Contacts of Structural Units in PDB entry:
5H35

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5H35 entry

There are 9 chains in PDB entry 5H35 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	ARG 220
B	ASP 1	ASN 217
C	MET 1	PHE 195
D	MET 1	PHE 195
E	MET 1	PHE 195
F	VAL 2	GLY 221
G	ASP 1	ASN 217
H	VAL 2	GLY 221
I	ASP 1	ASN 217

There are 51 helices in PDB entry 5H35. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	87	91	Right-handed 310
Helix 2	AA2	A	101	104	Right-handed 310
Helix 3	AA3	A	134	138	Right-handed 310
Helix 4	AA4	A	163	165	Right-handed 310
Helix 5	AA5	A	207	210	Right-handed 310
Helix 6	AA6	B	84	88	Right-handed 310
Helix 7	AA7	B	126	132	Right-handed alpha
Helix 8	AA8	B	188	194	Right-handed alpha
Helix 9	AA9	C	2	27	Right-handed alpha
Helix 10	AB1	C	30	53	Right-handed alpha
Helix 11	AB2	C	58	62	Right-handed 310
Helix 12	AB3	C	63	81	Right-handed alpha
Helix 13	AB4	C	82	84	Right-handed 310
Helix 14	AB5	C	85	115	Right-handed alpha
Helix 15	AB6	C	118	141	Right-handed alpha
Helix 16	AB7	C	145	150	Right-handed alpha
Helix 17	AB8	C	153	172	Right-handed alpha
Helix 18	AB9	C	174	195	Right-handed alpha
Helix 19	AC1	D	2	27	Right-handed alpha
Helix 20	AC2	D	30	54	Right-handed alpha
Helix 21	AC3	D	58	62	Right-handed 310
Helix 22	AC4	D	63	81	Right-handed alpha
Helix 23	AC5	D	82	84	Right-handed 310
Helix 24	AC6	D	85	115	Right-handed alpha
Helix 25	AC7	D	118	141	Right-handed alpha
Helix 26	AC8	D	145	150	Right-handed alpha
Helix 27	AC9	D	153	172	Right-handed alpha
Helix 28	AD1	D	174	194	Right-handed alpha
Helix 29	AD2	E	2	27	Right-handed alpha
Helix 30	AD3	E	30	53	Right-handed alpha
Helix 31	AD4	E	58	62	Right-handed 310
Helix 32	AD5	E	63	81	Right-handed alpha
Helix 33	AD6	E	86	115	Right-handed alpha
Helix 34	AD7	E	118	141	Right-handed alpha
Helix 35	AD8	E	145	150	Right-handed alpha
Helix 36	AD9	E	153	172	Right-handed alpha
Helix 37	AE1	E	174	195	Right-handed alpha
Helix 38	AE2	F	87	91	Right-handed 310
Helix 39	AE3	F	101	104	Right-handed 310
Helix 40	AE4	F	163	165	Right-handed 310
Helix 41	AE5	F	207	210	Right-handed 310
Helix 42	AE6	G	84	88	Right-handed 310
Helix 43	AE7	G	126	132	Right-handed alpha
Helix 44	AE8	G	188	194	Right-handed alpha
Helix 45	AE9	H	87	91	Right-handed 310
Helix 46	AF1	H	134	138	Right-handed 310
Helix 47	AF2	H	163	165	Right-handed 310
Helix 48	AF3	H	207	210	Right-handed 310
Helix 49	AF4	I	84	88	Right-handed 310
Helix 50	AF5	I	126	132	Right-handed alpha
Helix 51	AF6	I	188	194	Right-handed alpha

There are 31 sheets in PDB entry 5H35. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	17	24	anti-parallel
Strand 3	A	78	84	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	114	118	parallel
Strand 3	A	92	100	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	45	51	anti-parallel
Strand 6	A	58	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	114	118	parallel
Strand 3	A	92	100	anti-parallel
Strand 4	A	105	110	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	131	first strand
Strand 2	A	142	152	anti-parallel
Strand 3	A	181	191	anti-parallel
Strand 4	A	170	178	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	161	first strand
Strand 2	A	201	206	anti-parallel
Strand 3	A	211	216	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	75	80	anti-parallel
Strand 4	B	67	72	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	107	111	parallel
Strand 3	B	89	95	anti-parallel
Strand 4	B	38	43	anti-parallel
Strand 5	B	50	54	anti-parallel
Strand 6	B	58	59	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	107	111	parallel
Strand 3	B	89	95	anti-parallel
Strand 4	B	102	103	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	123	first strand
Strand 2	B	134	144	anti-parallel
Strand 3	B	178	187	anti-parallel
Strand 4	B	164	168	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	160	first strand
Strand 2	B	149	155	anti-parallel
Strand 3	B	196	203	anti-parallel
Strand 4	B	210	215	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	17	25	anti-parallel
Strand 3	F	78	84	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	114	118	parallel
Strand 3	F	92	100	anti-parallel
Strand 4	F	33	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	58	59	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	114	118	parallel
Strand 3	F	92	100	anti-parallel
Strand 4	F	105	110	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	131	first strand
Strand 2	F	142	152	anti-parallel
Strand 3	F	181	191	anti-parallel
Strand 4	F	170	178	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	161	first strand
Strand 2	F	201	206	anti-parallel
Strand 3	F	211	216	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	75	80	anti-parallel
Strand 4	G	67	72	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	107	111	parallel
Strand 3	G	89	95	anti-parallel
Strand 4	G	38	43	anti-parallel
Strand 5	G	50	54	anti-parallel
Strand 6	G	58	59	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	107	111	parallel
Strand 3	G	89	95	anti-parallel
Strand 4	G	102	103	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	119	123	first strand
Strand 2	G	134	144	anti-parallel
Strand 3	G	178	187	anti-parallel
Strand 4	G	164	168	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	158	160	first strand
Strand 2	G	149	155	anti-parallel
Strand 3	G	196	203	anti-parallel
Strand 4	G	210	215	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	114	118	parallel
Strand 3	H	92	100	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	59	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	114	118	parallel
Strand 3	H	92	100	anti-parallel
Strand 4	H	105	110	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	131	first strand
Strand 2	H	142	152	anti-parallel
Strand 3	H	181	191	anti-parallel
Strand 4	H	170	172	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	131	first strand
Strand 2	H	142	152	anti-parallel
Strand 3	H	181	191	anti-parallel
Strand 4	H	176	178	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	158	161	first strand
Strand 2	H	201	206	anti-parallel
Strand 3	H	211	216	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	75	80	anti-parallel
Strand 4	I	67	72	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	14	first strand
Strand 2	I	107	112	parallel
Strand 3	I	89	95	anti-parallel
Strand 4	I	38	43	anti-parallel
Strand 5	I	50	54	anti-parallel
Strand 6	I	58	59	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	14	first strand
Strand 2	I	107	112	parallel
Strand 3	I	89	95	anti-parallel
Strand 4	I	102	103	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	119	123	first strand
Strand 2	I	134	144	anti-parallel
Strand 3	I	178	187	anti-parallel
Strand 4	I	164	168	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	158	160	first strand
Strand 2	I	149	155	anti-parallel
Strand 3	I	196	203	anti-parallel
Strand 4	I	210	215	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5H35

Analysis of interatomic Contacts of Structural Units in PDB entry:
5H35