Analysis of interatomic Contacts of Structural Units in PDB entry:
5H3A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H3A entry

There are 2 chains in PDB entry 5H3A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 51ILE 331
B
 PRO 51MET 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5H3A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 68Right-handed alpha
Helix 2
AA2
A
104 117Right-handed alpha
Helix 3
AA3
A
121 128Right-handed alpha
Helix 4
AA4
A
133 138Right-handed alpha
Helix 5
AA5
A
138 146Right-handed alpha
Helix 6
AA6
A
158 166Right-handed alpha
Helix 7
AA7
A
183 195Right-handed alpha
Helix 8
AA8
A
207 214Right-handed 310
Helix 9
AA9
A
245 266Right-handed alpha
Helix 10
AB1
A
285 293Right-handed alpha
Helix 11
AB2
A
316 318Right-handed 310
Helix 12
AB3
B
53 68Right-handed alpha
Helix 13
AB4
B
104 118Right-handed alpha
Helix 14
AB5
B
121 128Right-handed alpha
Helix 15
AB6
B
133 138Right-handed alpha
Helix 16
AB7
B
138 145Right-handed alpha
Helix 17
AB8
B
158 166Right-handed alpha
Helix 18
AB9
B
183 195Right-handed alpha
Helix 19
AC1
B
207 214Right-handed 310
Helix 20
AC2
B
245 266Right-handed alpha
Helix 21
AC3
B
285 294Right-handed alpha
Helix 22
AC4
B
311 315Right-handed 310
Helix 23
AC5
B
316 318Right-handed 310
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There are 4 sheets in PDB entry 5H3A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
78 90anti-parallel
Strand 3
A
268 282anti-parallel
Strand 4
A
231 242parallel
Strand 5
A
220 228anti-parallel
Strand 6
A
202 204anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 305first strand
Strand 2
A
320 323anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 71first strand
Strand 2
B
79 90anti-parallel
Strand 3
B
268 282anti-parallel
Strand 4
B
231 242parallel
Strand 5
B
220 228anti-parallel
Strand 6
B
202 204anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 305first strand
Strand 2
B
320 323anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il