Analysis of interatomic Contacts of Structural Units in PDB entry:
5H3B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H3B entry

There are 2 chains in PDB entry 5H3B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ASP 214
B
 MSE 1ASP 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5H3B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 28Right-handed 310
Helix 2
AA2
A
66 75Right-handed alpha
Helix 3
AA3
A
100 110Right-handed alpha
Helix 4
AA4
A
112 125Right-handed alpha
Helix 5
AA5
A
126 134Right-handed alpha
Helix 6
AA6
A
140 158Right-handed alpha
Helix 7
AA7
A
179 188Right-handed alpha
Helix 8
AA8
A
202 206Right-handed 310
Helix 9
AA9
A
208 213Right-handed 310
Helix 10
AB1
B
23 28Right-handed 310
Helix 11
AB2
B
52 56Right-handed 310
Helix 12
AB3
B
66 75Right-handed alpha
Helix 13
AB4
B
100 110Right-handed alpha
Helix 14
AB5
B
112 125Right-handed alpha
Helix 15
AB6
B
126 134Right-handed alpha
Helix 16
AB7
B
140 158Right-handed alpha
Helix 17
AB8
B
179 188Right-handed alpha
Helix 18
AB9
B
202 206Right-handed 310
Helix 19
AC1
B
208 214Right-handed alpha
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There are 2 sheets in PDB entry 5H3B. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
36 42anti-parallel
Strand 3
A
12 17parallel
Strand 4
A
59 64parallel
Strand 5
A
82 86parallel
Strand 6
A
168 172parallel
Strand 7
A
192 196parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 6first strand
Strand 2
B
36 42anti-parallel
Strand 3
B
12 17parallel
Strand 4
B
59 64parallel
Strand 5
B
82 86parallel
Strand 6
B
168 172parallel
Strand 7
B
192 196parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il