Analysis of interatomic Contacts of Structural Units in PDB entry:
5H3D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H3D entry

There are 4 chains in PDB entry 5H3D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 364
B
 MET 1SER 361
C
 MET 1SER 364
D
 MET 1SER 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5H3D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 5Right-handed 310
Helix 2
AA2
A
14 69Right-handed alpha
Helix 3
AA3
A
73 108Right-handed alpha
Helix 4
AA4
A
108 116Right-handed alpha
Helix 5
AA5
A
117 144Right-handed alpha
Helix 6
AA6
A
148 209Right-handed alpha
Helix 7
AA7
A
209 249Right-handed alpha
Helix 8
AA8
A
344 364Right-handed alpha
Helix 9
AA9
B
7 13Right-handed alpha
Helix 10
AB1
B
14 68Right-handed alpha
Helix 11
AB2
B
73 78Right-handed alpha
Helix 12
AB3
B
78 116Right-handed alpha
Helix 13
AB4
B
117 143Right-handed alpha
Helix 14
AB5
B
149 249Right-handed alpha
Helix 15
AB6
B
311 313Right-handed 310
Helix 16
AB7
B
344 360Right-handed alpha
Helix 17
AB8
C
1 5Right-handed 310
Helix 18
AB9
C
14 70Right-handed alpha
Helix 19
AC1
C
73 108Right-handed alpha
Helix 20
AC2
C
108 116Right-handed alpha
Helix 21
AC3
C
117 143Right-handed alpha
Helix 22
AC4
C
148 209Right-handed alpha
Helix 23
AC5
C
209 249Right-handed alpha
Helix 24
AC6
C
261 266Right-handed alpha
Helix 25
AC7
C
344 364Right-handed alpha
Helix 26
AC8
D
6 12Right-handed alpha
Helix 27
AC9
D
14 70Right-handed alpha
Helix 28
AD1
D
73 78Right-handed alpha
Helix 29
AD2
D
78 116Right-handed alpha
Helix 30
AD3
D
117 141Right-handed alpha
Helix 31
AD4
D
149 249Right-handed alpha
Helix 32
AD5
D
344 360Right-handed alpha
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There are 6 sheets in PDB entry 5H3D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 309first strand
Strand 2
A
294 298anti-parallel
Strand 3
A
284 291anti-parallel
Strand 4
A
268 275anti-parallel
Strand 5
A
338 341anti-parallel
Strand 6
A
328 332anti-parallel
Strand 7
A
316 319anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 262first strand
Strand 2
B
265 275anti-parallel
Strand 3
B
283 290anti-parallel
Strand 4
B
295 297anti-parallel
Strand 5
B
306 309anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 318first strand
Strand 2
B
328 333anti-parallel
Strand 3
B
337 341anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
306 309first strand
Strand 2
C
294 298anti-parallel
Strand 3
C
284 291anti-parallel
Strand 4
C
268 275anti-parallel
Strand 5
C
338 341anti-parallel
Strand 6
C
328 333anti-parallel
Strand 7
C
315 319anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
268 275first strand
Strand 2
D
283 291anti-parallel
Strand 3
D
294 298anti-parallel
Strand 4
D
305 309anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
316 318first strand
Strand 2
D
328 332anti-parallel
Strand 3
D
337 341anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il