Analysis of interatomic Contacts of Structural Units in PDB entry:
5H3H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H3H entry

There are 2 chains in PDB entry 5H3H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 268
B
 MET 1SER 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 5H3H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 36Right-handed 310
Helix 2
AA2
A
37 48Right-handed alpha
Helix 3
AA3
A
70 86Right-handed alpha
Helix 4
AA4
A
97 110Right-handed alpha
Helix 5
AA5
A
138 150Right-handed alpha
Helix 6
AA6
A
152 165Right-handed alpha
Helix 7
AA7
A
170 183Right-handed alpha
Helix 8
AA8
A
185 199Right-handed alpha
Helix 9
AA9
A
204 208Right-handed 310
Helix 10
AB1
A
224 235Right-handed alpha
Helix 11
AB2
A
249 254Right-handed alpha
Helix 12
AB3
A
254 268Right-handed alpha
Helix 13
AB4
B
33 36Right-handed 310
Helix 14
AB5
B
37 47Right-handed alpha
Helix 15
AB6
B
70 86Right-handed alpha
Helix 16
AB7
B
96 110Right-handed alpha
Helix 17
AB8
B
138 150Right-handed alpha
Helix 18
AB9
B
152 165Right-handed alpha
Helix 19
AC1
B
170 183Right-handed alpha
Helix 20
AC2
B
185 199Right-handed alpha
Helix 21
AC3
B
201 208Right-handed 310
Helix 22
AC4
B
224 235Right-handed alpha
Helix 23
AC5
B
249 254Right-handed alpha
Helix 24
AC6
B
254 268Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5H3H. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
12 18anti-parallel
Strand 3
A
50 54anti-parallel
Strand 4
A
23 27parallel
Strand 5
A
90 95parallel
Strand 6
A
114 120parallel
Strand 7
A
211 217parallel
Strand 8
A
239 243parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
12 18anti-parallel
Strand 3
B
50 54anti-parallel
Strand 4
B
23 27parallel
Strand 5
B
90 95parallel
Strand 6
B
114 120parallel
Strand 7
B
211 217parallel
Strand 8
B
239 243parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il