Analysis of interatomic Contacts of Structural Units in PDB entry:
5H3K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H3K entry

There is 1 chain in PDB entry 5H3K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 47ARG 610
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5H3K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
82 90Right-handed alpha
Helix 2
AA2
A
131 135Right-handed 310
Helix 3
AA3
A
325 332Right-handed alpha
Helix 4
AA4
A
416 420Right-handed 310
Helix 5
AA5
A
489 495Right-handed 310
Helix 6
AA6
A
521 527Right-handed alpha
Helix 7
AA7
A
557 568Right-handed alpha
Helix 8
AA8
A
578 582Right-handed 310
Helix 9
AA9
A
594 598Right-handed 310
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There are 11 sheets in PDB entry 5H3K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
101 105anti-parallel
Strand 3
A
112 119anti-parallel
Strand 4
A
122 126anti-parallel
Strand 5
A
75 81anti-parallel
Strand 6
A
61 72anti-parallel
Strand 7
A
51 58anti-parallel
Strand 8
A
143 145parallel
Strand 9
A
138 140anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 161first strand
Strand 2
A
164 171anti-parallel
Strand 3
A
258 264anti-parallel
Strand 4
A
247 253anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 182first strand
Strand 2
A
185 190anti-parallel
Strand 3
A
235 241anti-parallel
Strand 4
A
226 232anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 276first strand
Strand 2
A
279 288anti-parallel
Strand 3
A
291 300anti-parallel
Strand 4
A
542 547anti-parallel
Strand 5
A
531 536anti-parallel
Strand 6
A
572 576anti-parallel
Strand 7
A
504 507anti-parallel
Strand 8
A
510 511anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 313first strand
Strand 2
A
603 609anti-parallel
Strand 3
A
336 339anti-parallel
Strand 4
A
584 586anti-parallel
Strand 5
A
589 590anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 324first strand
Strand 2
A
600 601anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 344first strand
Strand 2
A
349 350anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 362first strand
Strand 2
A
354 356anti-parallel
Strand 3
A
497 500anti-parallel
Strand 4
A
369 373anti-parallel
Strand 5
A
379 383anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 400first strand
Strand 2
A
385 392anti-parallel
Strand 3
A
481 488anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 403first strand
Strand 2
A
411 415parallel
Strand 3
A
460 466anti-parallel
Strand 4
A
430 436anti-parallel
Strand 5
A
439 446anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 423first strand
Strand 2
A
454 455anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il