Analysis of interatomic Contacts of Structural Units in PDB entry:
5H3T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5H3T entry

There are 2 chains in PDB entry 5H3T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	GLN 722
B	GLN 3	MET 714

There are 27 helices in PDB entry 5H3T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	46	Right-handed 310
Helix 2	AA2	A	304	306	Right-handed 310
Helix 3	AA3	A	522	530	Right-handed alpha
Helix 4	AA4	A	593	597	Right-handed 310
Helix 5	AA5	A	614	621	Right-handed alpha
Helix 6	AA6	A	670	672	Right-handed 310
Helix 7	AA7	A	713	715	Right-handed 310
Helix 8	AA8	B	43	46	Right-handed 310
Helix 9	AA9	B	182	184	Right-handed 310
Helix 10	AB1	B	304	306	Right-handed 310
Helix 11	AB2	B	522	530	Right-handed alpha
Helix 12	AB3	B	593	597	Right-handed 310
Helix 13	AB4	B	614	621	Right-handed alpha
Helix 14	AB5	B	713	715	Right-handed 310
Helix 15	AB6	C	43	46	Right-handed 310
Helix 16	AB7	C	304	306	Right-handed 310
Helix 17	AB8	C	522	530	Right-handed alpha
Helix 18	AB9	C	593	597	Right-handed 310
Helix 19	AC1	C	614	621	Right-handed alpha
Helix 20	AC2	C	670	672	Right-handed 310
Helix 21	AC3	C	713	715	Right-handed 310
Helix 22	AC4	D	43	46	Right-handed 310
Helix 23	AC5	D	304	306	Right-handed 310
Helix 24	AC6	D	522	530	Right-handed alpha
Helix 25	AC7	D	593	597	Right-handed 310
Helix 26	AC8	D	614	619	Right-handed alpha
Helix 27	AC9	D	713	715	Right-handed 310

There are 56 sheets in PDB entry 5H3T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	8	first strand
Strand 2	A	707	711	anti-parallel
Strand 3	A	697	702	anti-parallel
Strand 4	A	685	690	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	23	first strand
Strand 2	A	27	32	anti-parallel
Strand 3	A	35	41	anti-parallel
Strand 4	A	54	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	72	first strand
Strand 2	A	81	86	anti-parallel
Strand 3	A	90	95	anti-parallel
Strand 4	A	100	105	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	117	first strand
Strand 2	A	124	129	anti-parallel
Strand 3	A	133	138	anti-parallel
Strand 4	A	143	148	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	159	first strand
Strand 2	A	166	171	anti-parallel
Strand 3	A	176	180	anti-parallel
Strand 4	A	186	191	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	203	first strand
Strand 2	A	241	246	anti-parallel
Strand 3	A	250	255	anti-parallel
Strand 4	A	260	266	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	290	first strand
Strand 2	A	298	303	anti-parallel
Strand 3	A	307	312	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	344	first strand
Strand 2	A	350	356	anti-parallel
Strand 3	A	360	365	anti-parallel
Strand 4	A	371	376	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	387	first strand
Strand 2	A	394	399	anti-parallel
Strand 3	A	404	408	anti-parallel
Strand 4	A	418	421	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	434	first strand
Strand 2	A	441	446	anti-parallel
Strand 3	A	450	455	anti-parallel
Strand 4	A	463	468	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	479	first strand
Strand 2	A	497	502	anti-parallel
Strand 3	A	507	510	anti-parallel
Strand 4	A	520	521	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	539	544	first strand
Strand 2	A	550	555	anti-parallel
Strand 3	A	559	564	anti-parallel
Strand 4	A	569	575	anti-parallel
Strand 5	A	626	628	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	581	586	first strand
Strand 2	A	599	604	anti-parallel
Strand 3	A	609	613	anti-parallel
Strand 4	A	633	635	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	647	first strand
Strand 2	A	654	659	anti-parallel
Strand 3	A	664	668	anti-parallel
Strand 4	A	673	678	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	8	first strand
Strand 2	B	707	711	anti-parallel
Strand 3	B	697	702	anti-parallel
Strand 4	B	685	690	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	23	first strand
Strand 2	B	27	32	anti-parallel
Strand 3	B	35	41	anti-parallel
Strand 4	B	54	60	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	72	first strand
Strand 2	B	81	86	anti-parallel
Strand 3	B	91	95	anti-parallel
Strand 4	B	100	105	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	117	first strand
Strand 2	B	124	129	anti-parallel
Strand 3	B	133	138	anti-parallel
Strand 4	B	143	148	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	159	first strand
Strand 2	B	166	171	anti-parallel
Strand 3	B	176	180	anti-parallel
Strand 4	B	187	191	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	203	first strand
Strand 2	B	241	246	anti-parallel
Strand 3	B	250	255	anti-parallel
Strand 4	B	261	266	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	290	first strand
Strand 2	B	298	302	anti-parallel
Strand 3	B	308	312	anti-parallel
Strand 4	B	320	323	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	344	first strand
Strand 2	B	350	356	anti-parallel
Strand 3	B	361	365	anti-parallel
Strand 4	B	370	375	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	382	387	first strand
Strand 2	B	394	399	anti-parallel
Strand 3	B	403	408	anti-parallel
Strand 4	B	418	422	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	429	434	first strand
Strand 2	B	441	446	anti-parallel
Strand 3	B	451	455	anti-parallel
Strand 4	B	463	464	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	479	first strand
Strand 2	B	497	502	anti-parallel
Strand 3	B	507	510	anti-parallel
Strand 4	B	520	521	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	539	544	first strand
Strand 2	B	550	555	anti-parallel
Strand 3	B	560	564	anti-parallel
Strand 4	B	569	574	anti-parallel
Strand 5	B	626	628	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	581	586	first strand
Strand 2	B	599	604	anti-parallel
Strand 3	B	609	613	anti-parallel
Strand 4	B	633	635	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	642	647	first strand
Strand 2	B	654	659	anti-parallel
Strand 3	B	664	668	anti-parallel
Strand 4	B	673	678	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	8	first strand
Strand 2	C	707	711	anti-parallel
Strand 3	C	697	702	anti-parallel
Strand 4	C	685	690	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	23	first strand
Strand 2	C	27	32	anti-parallel
Strand 3	C	35	41	anti-parallel
Strand 4	C	54	60	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	72	first strand
Strand 2	C	81	86	anti-parallel
Strand 3	C	91	95	anti-parallel
Strand 4	C	100	105	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	117	first strand
Strand 2	C	124	129	anti-parallel
Strand 3	C	134	138	anti-parallel
Strand 4	C	143	147	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	159	first strand
Strand 2	C	166	171	anti-parallel
Strand 3	C	176	180	anti-parallel
Strand 4	C	187	191	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	203	first strand
Strand 2	C	241	246	anti-parallel
Strand 3	C	250	255	anti-parallel
Strand 4	C	260	266	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	289	290	first strand
Strand 2	C	298	302	anti-parallel
Strand 3	C	308	312	anti-parallel
Strand 4	C	320	323	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	344	first strand
Strand 2	C	350	356	anti-parallel
Strand 3	C	361	365	anti-parallel
Strand 4	C	370	375	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	382	387	first strand
Strand 2	C	394	399	anti-parallel
Strand 3	C	404	408	anti-parallel
Strand 4	C	418	421	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	429	434	first strand
Strand 2	C	441	446	anti-parallel
Strand 3	C	451	455	anti-parallel
Strand 4	C	463	464	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	479	first strand
Strand 2	C	497	502	anti-parallel
Strand 3	C	507	510	anti-parallel
Strand 4	C	520	521	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	539	544	first strand
Strand 2	C	550	555	anti-parallel
Strand 3	C	560	564	anti-parallel
Strand 4	C	569	574	anti-parallel
Strand 5	C	626	628	parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	581	586	first strand
Strand 2	C	599	604	anti-parallel
Strand 3	C	609	613	anti-parallel
Strand 4	C	633	635	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	647	first strand
Strand 2	C	654	659	anti-parallel
Strand 3	C	664	668	anti-parallel
Strand 4	C	673	678	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	8	first strand
Strand 2	D	707	711	anti-parallel
Strand 3	D	697	702	anti-parallel
Strand 4	D	685	690	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	23	first strand
Strand 2	D	27	32	anti-parallel
Strand 3	D	35	41	anti-parallel
Strand 4	D	54	60	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	72	first strand
Strand 2	D	81	86	anti-parallel
Strand 3	D	91	95	anti-parallel
Strand 4	D	100	105	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	117	first strand
Strand 2	D	124	129	anti-parallel
Strand 3	D	133	138	anti-parallel
Strand 4	D	143	148	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	159	first strand
Strand 2	D	166	171	anti-parallel
Strand 3	D	176	180	anti-parallel
Strand 4	D	186	191	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	203	first strand
Strand 2	D	241	246	anti-parallel
Strand 3	D	250	255	anti-parallel
Strand 4	D	261	266	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	289	290	first strand
Strand 2	D	298	302	anti-parallel
Strand 3	D	308	312	anti-parallel
Strand 4	D	320	323	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	344	first strand
Strand 2	D	350	356	anti-parallel
Strand 3	D	361	365	anti-parallel
Strand 4	D	370	375	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	382	387	first strand
Strand 2	D	394	399	anti-parallel
Strand 3	D	404	408	anti-parallel
Strand 4	D	417	421	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	429	434	first strand
Strand 2	D	441	446	anti-parallel
Strand 3	D	451	455	anti-parallel
Strand 4	D	463	464	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	473	479	first strand
Strand 2	D	497	502	anti-parallel
Strand 3	D	507	510	anti-parallel
Strand 4	D	520	521	anti-parallel

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There are 5 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	539	544	first strand
Strand 2	D	550	555	anti-parallel
Strand 3	D	560	564	anti-parallel
Strand 4	D	572	574	anti-parallel
Strand 5	D	627	628	parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	581	586	first strand
Strand 2	D	599	604	anti-parallel
Strand 3	D	609	613	anti-parallel
Strand 4	D	633	635	anti-parallel

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There are 4 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	642	647	first strand
Strand 2	D	654	659	anti-parallel
Strand 3	D	664	668	anti-parallel
Strand 4	D	673	678	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5H3T

Analysis of interatomic Contacts of Structural Units in PDB entry:
5H3T