Analysis of interatomic Contacts of Structural Units in PDB entry:
5H3W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H3W entry

There are 2 chains in PDB entry 5H3W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4ILE 284
B
 ARG 3ILE 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5H3W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 37Right-handed alpha
Helix 2
AA2
A
40 50Right-handed alpha
Helix 3
AA3
A
89 130Right-handed alpha
Helix 4
AA4
A
132 146Right-handed alpha
Helix 5
AA5
A
180 190Right-handed alpha
Helix 6
AA6
A
218 232Right-handed alpha
Helix 7
AA7
A
249 251Right-handed 310
Helix 8
AA8
A
275 282Right-handed alpha
Helix 9
AA9
B
5 37Right-handed alpha
Helix 10
AB1
B
42 46Right-handed 310
Helix 11
AB2
B
90 130Right-handed alpha
Helix 12
AB3
B
132 146Right-handed alpha
Helix 13
AB4
B
180 190Right-handed alpha
Helix 14
AB5
B
218 232Right-handed alpha
Helix 15
AB6
B
249 251Right-handed 310
Helix 16
AB7
B
275 283Right-handed alpha
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There are 2 sheets in PDB entry 5H3W. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 167first strand
Strand 2
A
174 177anti-parallel
Strand 3
A
209 212anti-parallel
Strand 4
A
197 201anti-parallel
Strand 5
A
241 247anti-parallel
Strand 6
A
268 272anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 167first strand
Strand 2
B
174 177anti-parallel
Strand 3
B
209 212anti-parallel
Strand 4
B
197 201anti-parallel
Strand 5
B
241 247anti-parallel
Strand 6
B
268 272anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il