Analysis of interatomic Contacts of Structural Units in PDB entry:
5H41

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5H41 entry

There are 2 chains in PDB entry 5H41 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	ASN 1113
B	GLY 1	ASN 1113

There are 68 helices in PDB entry 5H41. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	132	138	Right-handed alpha
Helix 2	AA2	A	138	145	Right-handed alpha
Helix 3	AA3	A	190	194	Right-handed alpha
Helix 4	AA4	A	197	202	Right-handed alpha
Helix 5	AA5	A	204	209	Right-handed 310
Helix 6	AA6	A	257	266	Right-handed alpha
Helix 7	AA7	A	294	302	Right-handed alpha
Helix 8	AA8	A	329	333	Right-handed alpha
Helix 9	AA9	A	493	498	Right-handed alpha
Helix 10	AB1	A	518	523	Right-handed 310
Helix 11	AB2	A	564	580	Right-handed alpha
Helix 12	AB3	A	592	615	Right-handed alpha
Helix 13	AB4	A	629	633	Right-handed alpha
Helix 14	AB5	A	634	643	Right-handed alpha
Helix 15	AB6	A	645	658	Right-handed alpha
Helix 16	AB7	A	688	703	Right-handed alpha
Helix 17	AB8	A	704	709	Right-handed 310
Helix 18	AB9	A	729	742	Right-handed alpha
Helix 19	AC1	A	759	763	Right-handed 310
Helix 20	AC2	A	766	772	Right-handed alpha
Helix 21	AC3	A	776	794	Right-handed alpha
Helix 22	AC4	A	797	819	Right-handed alpha
Helix 23	AC5	A	853	863	Right-handed alpha
Helix 24	AC6	A	867	882	Right-handed alpha
Helix 25	AC7	A	906	911	Right-handed alpha
Helix 26	AC8	A	915	920	Right-handed 310
Helix 27	AC9	A	922	937	Right-handed alpha
Helix 28	AD1	A	938	949	Right-handed alpha
Helix 29	AD2	A	953	958	Right-handed alpha
Helix 30	AD3	A	979	986	Right-handed alpha
Helix 31	AD4	A	988	993	Right-handed alpha
Helix 32	AD5	A	1006	1017	Right-handed alpha
Helix 33	AD6	A	1036	1040	Right-handed 310
Helix 34	AD7	A	1094	1104	Right-handed alpha
Helix 35	AD8	B	132	138	Right-handed alpha
Helix 36	AD9	B	138	145	Right-handed alpha
Helix 37	AE1	B	190	194	Right-handed alpha
Helix 38	AE2	B	197	202	Right-handed alpha
Helix 39	AE3	B	204	209	Right-handed 310
Helix 40	AE4	B	257	266	Right-handed alpha
Helix 41	AE5	B	294	302	Right-handed alpha
Helix 42	AE6	B	329	333	Right-handed alpha
Helix 43	AE7	B	493	498	Right-handed 310
Helix 44	AE8	B	518	523	Right-handed 310
Helix 45	AE9	B	564	580	Right-handed alpha
Helix 46	AF1	B	592	615	Right-handed alpha
Helix 47	AF2	B	629	633	Right-handed alpha
Helix 48	AF3	B	634	643	Right-handed alpha
Helix 49	AF4	B	645	659	Right-handed alpha
Helix 50	AF5	B	688	703	Right-handed alpha
Helix 51	AF6	B	704	709	Right-handed 310
Helix 52	AF7	B	729	742	Right-handed alpha
Helix 53	AF8	B	759	763	Right-handed 310
Helix 54	AF9	B	766	772	Right-handed alpha
Helix 55	AG1	B	776	794	Right-handed alpha
Helix 56	AG2	B	797	819	Right-handed alpha
Helix 57	AG3	B	853	863	Right-handed alpha
Helix 58	AG4	B	867	882	Right-handed alpha
Helix 59	AG5	B	906	911	Right-handed alpha
Helix 60	AG6	B	915	920	Right-handed 310
Helix 61	AG7	B	922	937	Right-handed alpha
Helix 62	AG8	B	938	949	Right-handed alpha
Helix 63	AG9	B	953	958	Right-handed alpha
Helix 64	AH1	B	979	986	Right-handed alpha
Helix 65	AH2	B	988	993	Right-handed alpha
Helix 66	AH3	B	1006	1017	Right-handed alpha
Helix 67	AH4	B	1036	1040	Right-handed 310
Helix 68	AH5	B	1094	1104	Right-handed alpha

There are 27 sheets in PDB entry 5H41. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	A	478	483	anti-parallel
Strand 3	A	486	491	anti-parallel
Strand 4	A	505	509	anti-parallel
Strand 5	A	543	551	anti-parallel
Strand 6	A	446	453	anti-parallel
Strand 7	A	432	440	anti-parallel
Strand 8	A	422	429	anti-parallel
Strand 9	A	415	419	anti-parallel
Strand 10	A	325	328	anti-parallel
Strand 11	A	314	319	anti-parallel
Strand 12	A	306	311	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	17	21	anti-parallel
Strand 3	A	27	32	anti-parallel
Strand 4	A	35	36	anti-parallel
Strand 5	A	130	131	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	153	first strand
Strand 2	A	156	163	anti-parallel
Strand 3	A	173	179	anti-parallel
Strand 4	A	230	245	anti-parallel
Strand 5	A	105	126	anti-parallel
Strand 6	A	92	100	anti-parallel
Strand 7	A	82	89	anti-parallel
Strand 8	A	75	78	anti-parallel
Strand 9	A	274	276	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	163	anti-parallel
Strand 3	B	173	179	anti-parallel
Strand 4	B	230	245	anti-parallel
Strand 5	B	105	126	anti-parallel
Strand 6	B	92	100	anti-parallel
Strand 7	B	82	89	anti-parallel
Strand 8	B	75	78	anti-parallel
Strand 9	B	274	276	anti-parallel

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There are 14 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	163	anti-parallel
Strand 3	B	183	189	parallel
Strand 4	B	221	227	anti-parallel
Strand 5	B	105	126	anti-parallel
Strand 6	B	51	58	anti-parallel
Strand 7	B	61	66	anti-parallel
Strand 8	A	61	66	anti-parallel
Strand 9	A	51	58	anti-parallel
Strand 10	A	105	126	anti-parallel
Strand 11	A	221	227	anti-parallel
Strand 12	A	183	189	anti-parallel
Strand 13	A	156	163	parallel
Strand 14	A	146	153	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	344	first strand
Strand 2	A	357	362	anti-parallel
Strand 3	A	366	373	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	409	first strand
Strand 2	A	397	403	anti-parallel
Strand 3	A	459	466	anti-parallel
Strand 4	A	533	541	anti-parallel
Strand 5	A	515	517	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	584	586	first strand
Strand 2	A	1043	1048	anti-parallel
Strand 3	A	1051	1059	anti-parallel
Strand 4	A	1106	1111	parallel
Strand 5	A	1067	1071	anti-parallel
Strand 6	A	1074	1075	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	628	first strand
Strand 2	A	670	671	anti-parallel
Strand 3	A	679	680	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	712	first strand
Strand 2	A	727	728	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	773	775	first strand
Strand 2	A	828	833	anti-parallel
Strand 3	A	836	840	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	820	821	first strand
Strand 2	A	824	825	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	883	884	first strand
Strand 2	A	887	888	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	973	975	first strand
Strand 2	A	997	999	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1022	1025	first strand
Strand 2	A	1028	1031	anti-parallel
Strand 3	A	1090	1093	anti-parallel
Strand 4	A	1079	1080	anti-parallel

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There are 12 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	478	483	anti-parallel
Strand 3	B	486	491	anti-parallel
Strand 4	B	505	509	anti-parallel
Strand 5	B	543	551	anti-parallel
Strand 6	B	446	453	anti-parallel
Strand 7	B	432	440	anti-parallel
Strand 8	B	422	429	anti-parallel
Strand 9	B	415	419	anti-parallel
Strand 10	B	325	328	anti-parallel
Strand 11	B	314	319	anti-parallel
Strand 12	B	306	311	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	17	21	anti-parallel
Strand 3	B	27	32	anti-parallel
Strand 4	B	35	36	anti-parallel
Strand 5	B	130	131	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	344	first strand
Strand 2	B	357	362	anti-parallel
Strand 3	B	366	373	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	406	409	first strand
Strand 2	B	397	403	anti-parallel
Strand 3	B	459	466	anti-parallel
Strand 4	B	533	541	anti-parallel
Strand 5	B	515	517	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	584	586	first strand
Strand 2	B	1043	1048	anti-parallel
Strand 3	B	1051	1059	anti-parallel
Strand 4	B	1106	1111	parallel
Strand 5	B	1067	1071	anti-parallel
Strand 6	B	1074	1075	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	627	628	first strand
Strand 2	B	670	671	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	712	first strand
Strand 2	B	727	728	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	773	775	first strand
Strand 2	B	828	833	anti-parallel
Strand 3	B	836	840	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	820	821	first strand
Strand 2	B	824	825	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	883	884	first strand
Strand 2	B	887	888	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	973	975	first strand
Strand 2	B	997	999	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1022	1025	first strand
Strand 2	B	1028	1031	anti-parallel
Strand 3	B	1090	1093	anti-parallel
Strand 4	B	1079	1080	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5H41

Analysis of interatomic Contacts of Structural Units in PDB entry:
5H41